accessionToUID | A function to convert accession values to NCBI UIDs. |
ACCNUMStats | Provides statistics on the types of ids used for the ACCNUM... |
annPkgName | Get annotation package name from chip name |
aqListGOIDs | List GO Identifiers by GO Ontology |
blastSequences | Run a blast query to NCBI for either a string or an entrez... |
buildChromLocation | A function to generate an instantiation of a chromLocation... |
buildPubMedAbst | A function to generate an instantiation of a pubMedAbst class |
chrCats | Returns a list of chromosome locations from a MAP environment |
chromLocation-class | Class chromLocation, a class for describing genes and their... |
compatibleVersions | function to check to see if the packages represented by the... |
dropECode | Drop GO labels for specified Evidence Codes |
entrezGeneByID | Create a Query String for an Entrez Gene Identifier |
entrezGeneQuery | Create a Query String for Entrez Genes |
filterGOByOntology | Filter GO terms by a specified GO ontology |
findNeighbors | A function to locate neighboring genes within a defined range... |
genbank | A function to open the browser to Genbank with the selected... |
getAnnMap | Get annotation map |
getEvidence | Get the Evidence codes for a set of GO terms. |
getGOTerm | Functions to Access GO data. |
getOntology | Get GO terms for a specified ontology |
getPMInfo | extract publication details and abstract from... |
getSeq4Acc | Queries the NCBI database to obtain the sequence for a given... |
getSYMBOL | Functions to deal with Data Packages |
getTDRows | Functions to create hypertext links that can be placed in a... |
GO2heatmap | Compute a heatmap for the specified data, for either a GO... |
GOmnplot | A function to plot by group means against each other. |
hasGOannote | Check for GO annotation |
hgByChroms | A dataset to show the human genome base pair locations per... |
hgCLengths | A dataset which contains the lengths (in base pairs) of the... |
hgu95Achroloc | Annotation data for the Affymetrix HGU95A GeneChip |
hgu95Achrom | Annotation data for the Affymetrix HGU95A GeneChip |
hgu95All | Annotation data for the Affymetrix HGU95A GeneChip |
hgu95AProbLocs | chromLocation instance hgu95AProbLocs, an example of a... |
hgu95Asym | Annotation data for the Affymetrix HGU95A GeneChip |
homoData-class | Class "homoData" |
htmlpage | Functions to build HTML pages |
HTMLPage-class | Classes to represent HTML pages |
isValidkey | Get or verify valid IDs for a package or OrgDb object. |
LL2homology | DEFUNCT Functions that find the homology data for a given set... |
makeAnchor | A Function To Generate HTML Anchors |
mapOrgs | Functions to map to organism IDs used by NCBI homology. |
organism | Convenience function for getting the organism from an object... |
pmAbst2HTML | HTML Generation for PubMed Abstracts |
pm.abstGrep | An interface to grep for PubMed abstracts. |
pm.getabst | Obtain the abstracts for a set PubMed list. |
pmid2MIAME | use web to populate MIAME instance with pubmed details |
PMIDAmat | A function to compute the probe to PubMed id incidence... |
pmidQuery | A function to query PubMed |
pm.titles | Obtain the titles of the PubMed abstracts. |
pubmed | A function to open the browser to Pubmed with the selected... |
pubMedAbst-class | Class pubMedAbst, a class to handle PubMed abstracts, and... |
PWAmat | A function to compute the probe to KEGG pathway incidence... |
readGEOAnn | Function to extract data from the GEO web site |
serializeEnv | A Function To Serialize Environment |
setRepository | Functions to add arbitrary repositories |
UniGeneQuery | Create a Query String for a UniGene Identifier |
updateSymbolsToValidKeys | Take a list of symbols and translate them into the best... |
usedChromGenes | A function to select used genes on a chromosome from an... |
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