NEWS.md

In Bioconductor/hca: Exploring the Human Cell Atlas Data Coordinating Platform

Changes in version 1.12

Bug fixes

• (v. 1.11.1) unlink cache on Bioconductor build system once every 2 weeks to mitigate cache corruption.

• (v. 1.11.2) manifest() requires modification to accommodate changes introduced by HCA

Changes in version 1.8

New features

• (v. 1.7.1) Implement project_title() and project_information() to retrieve summary information from project IDs.

Changes in version 1.6

New features

• (v. 1.5.1) Implement hca_view() for intereactive tibble view & filter

• (v. 1.5.7) Allow user to specify prefered catalog via argument to catalogs()

User visible changes

• (v. 1.5.3) Provide more default projects() columns (similar to data portal).

• (v. 1.5.4) Improve vignette readability by shortening output of some code chunks; use built-in 'pipe', |>.

Bug fixes

• (v. 1.5.2) projects() constructs the complete tibble of projects by paging through result sets of size 100, to accommodate upstream changes. See https://github.com/Bioconductor/hca/issues/33

• (v. 1.5.5) facet_options()consults the correct part of the updated API specification to find available filters.

Changes in version 1.2

New features

• (v. 1.1.5) Implement manifest() endpoint. Impement "tibble_expand" option for projects(), bundles(), samples(), and files(). Implement optimus_loom_annotation().

Bug fixes

• (v. 1.2.1) manifest() uses all rows to guess column format.

Changes in RELEASE version 1.0 (2021-08-19)

Bug fixes

• (v. 1.0.3) Update unnamed query columns s.t. they are named more compactly
• (v. 1.0.3) Update how .as_tbl_hca() supports queries where all values are NULL
• (v. 1.0.3) Update how class definitions for tibbles returned by projects(), files(), samples(), and bundles() are applied; ensure that all tibbles have minimum necessary columns.
• (v. 1.0.2) Update files_download() to clarify error message
• (v. 1.0.1) Update files_download() to avoid unnecessary downloads
• (v. 1.0.1) Update filters() to handle long character strings without newline breaks

Changes in version 0.99.0 (2021-02-26)

• Prep for submission to Bioconductor
• Added a NEWS.md file to track changes to the package.

Bioconductor/hca documentation built on May 3, 2024, 1:49 p.m.