Bioconductor/hcaquery: Conversion of single cell experiment output files to relational database

This package is a follow-up to the `hca` package, a wrapper around the API provided by the Human Cell Atlas to access single cell experiment output. Here, we dowload sets of `.loom` and `.h5ad` files and extract their assay matrices, gene annotations, and cell annotations for representation in a relational database structure for easier querying.

Getting started

Package details

Bioconductor views SingleCell Software
Maintainer
LicenseMIT + file LICENSE
Version0.0.1
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("Bioconductor/hcaquery")
Bioconductor/hcaquery documentation built on Dec. 17, 2021, 10:56 a.m.