database: Populating database with data output of single cell...

In Bioconductor/hcaquery: Conversion of single cell experiment output files to relational database

Description

function which takes a file tibble and for each file, generates a SummarizedExperiment and extracts cell annotation, gene annotation, assay, and experiment level data into a specified relational database

helper function for processing a single file and inserting it's information into the database; all data in the same tables

Usage

files_to_db(file_tbl = NULL)

.single_file_to_db_compact(file_path, fileId, version, projectTitle, projectId)

Arguments

file_tbl	tbl_hca tibble of files as returned by hca::files()
file_path	character() location of experiment output file
fileId	character() unique identifier of file
version	character() file version
projectTitle	character() title of file's associated project
projectId	character() unique identifier of the file's associated project

Bioconductor/hcaquery documentation built on Dec. 17, 2021, 10:56 a.m.