tcgaMutationExpr: Correlation between mutation and expression

In BioinfoFungi/bioinfoR: What the Package Does (One Line, Title Case)

Description

Correlation between mutation and expression

Usage

tcgaMutationExpr(
  cancer,
  genes,
  location = NULL,
  isLocalPath = global_env$isLocalPath
)

Arguments

cancer	The type of TCGA cancer, such as CHOL
gene	gene symbol, such as ARID1A

Value

a data frame

Author(s)

YangWang [e-mail]

Examples

plot_data <- tcgaMutationExpr(cancer="CHOL",gene="ARID1A")
boxplot(expr~mutation,data =plot_data,col=c("red","blue"),main="ARID1A")

plot_data <- tcgaMutationExpr(cancer="CHOL",gene=c("ARID1A","PTEN"))
lapply(plot_data,function(x){
  dev.new()
  boxplot(expr~mutation,data =x$expr,col=c("red","blue"),main=x$gene)
})

BioinfoFungi/bioinfoR documentation built on Dec. 17, 2021, 10:56 a.m.