Files in BiologicalRecordsCentre/BRCindicators
Creating multispecies biodiversity indicators
.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.gitignore
BRCindicators.Rproj
DESCRIPTION
NAMESPACE
R/CompositeTrend.r
R/GAM_smoothing.R
R/bats-data.R
R/bayesian_meta_analysis.R
R/bma_BUGS_models.R
R/bootstrap_indicator.R
R/bootstrap_posteriors.r
R/butterflies_hs-data.R
R/butterflies_wc-data.R
R/cap_index.r
R/detect_jags.r
R/dragonflies-data.R
R/entering_multiplier.r
R/geomean.r
R/getData.r
R/get_bmaBUGScode.R
R/indicator_assessment.r
R/lambda_calc.r
R/lambda_indicator.r
R/leaving_multiplier.r
R/list_geomean.r
R/list_quantiles_CI.r
R/list_to_array.r
R/makeZ.R
R/makeZX.r
R/msi.R
R/msi_tool.R
R/plot.MSI.R
R/plot_growthrates.R
R/plot_indicator.R
R/plot_species.R
R/plot_trend_stack.r
R/read_posterior.r
R/remove_bad_species.r
R/remove_bad_years.r
R/rescale_posterior.r
R/rescale_species.R
R/scale_indicator.R
R/simulate_indicator.R
R/species_assessment.r
R/subset_years.r
R/summarise_occDet.R
R/trend_assessment.r
R/trend_summary_helper_functions.r
README.md
_pkgdown.yml
data/bats.RData
data/butterflies_hs.RData
data/butterflies_wc.RData
data/dragonflies.RData
docs/404.html
docs/articles/index.html
docs/articles/vignette.html
docs/articles/vignette_files/figure-html/BMAplot-1.png
docs/articles/vignette_files/figure-html/in_one-1.png
docs/articles/vignette_files/figure-html/lambda_2-1.png
docs/articles/vignette_files/figure-html/lambda_3-1.png
docs/articles/vignette_files/figure-html/msi1-1.png
docs/articles/vignette_files/figure-html/msi1-2.png
docs/articles/vignette_files/figure-html/msi1-3.png
docs/articles/vignette_files/figure-html/msi1-4.png
docs/articles/vignette_files/figure-html/msi2-1.png
docs/articles/vignette_files/figure-html/msi2-2.png
docs/articles/vignette_files/figure-html/msi_span-1.png
docs/articles/vignette_files/figure-html/msi_span-2.png
docs/articles/vignette_files/figure-html/msi_span-3.png
docs/articles/vignette_files/figure-html/plot_indicator-1.png
docs/articles/vignette_files/figure-html/runBMA-1.png
docs/articles/vignette_files/figure-html/runBMAparameters-1.png
docs/articles/vignette_files/figure-html/smoothing_indicator-1.png
docs/articles/vignette_files/figure-html/smoothing_indicator-2.png
docs/authors.html
docs/deps/bootstrap-5.3.1/bootstrap.bundle.min.js
docs/deps/bootstrap-5.3.1/bootstrap.bundle.min.js.map
docs/deps/bootstrap-5.3.1/bootstrap.min.css
docs/deps/data-deps.txt
docs/deps/jquery-3.6.0/jquery-3.6.0.js
docs/deps/jquery-3.6.0/jquery-3.6.0.min.js
docs/deps/jquery-3.6.0/jquery-3.6.0.min.map
docs/index.html
docs/link.svg
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/CompositeTrend.html
docs/reference/GAM_smoothing.html
docs/reference/Rplot001.png
docs/reference/Rplot002.png
docs/reference/bats.html
docs/reference/bma.html
docs/reference/bootstrap_indicator.html
docs/reference/butterflies_hs.html
docs/reference/butterflies_wc.html
docs/reference/dragonflies.html
docs/reference/get_bmaBUGScode.html
docs/reference/index.html
docs/reference/lambda_indicator-1.png
docs/reference/lambda_indicator.html
docs/reference/msi-1.png
docs/reference/msi-2.png
docs/reference/msi.html
docs/reference/msi_tool.html
docs/reference/plot.MSI.html
docs/reference/plot_indicator.html
docs/reference/plot_trend_stack-1.png
docs/reference/plot_trend_stack.html
docs/reference/rescale_posterior.html
docs/reference/rescale_species.html
docs/reference/summarise_occDet.html
docs/reference/trend_assessment.html
docs/search.json
docs/sitemap.xml
inst/doc/vignette.Rmd
inst/doc/vignette.html
inst/doc/vignette.md
man/CompositeTrend.Rd
man/GAM_smoothing.Rd
man/bats.Rd
man/bma.Rd
man/bootstrap_indicator.Rd
man/butterflies_hs.Rd
man/butterflies_wc.Rd
man/dragonflies.Rd
man/get_bmaBUGScode.Rd
man/lambda_indicator.Rd
man/msi.Rd
man/msi_tool.Rd
man/plot.MSI.Rd
man/plot_indicator.Rd
man/plot_trend_stack.Rd
man/rescale_posterior.Rd
man/rescale_species.Rd
man/summarise_occDet.Rd
man/trend_assessment.Rd
tests/testthat.R
tests/testthat/helper-CompositeTrend.R
tests/testthat/helper-bayesian_meta_analysis.R
tests/testthat/helper-bootstrap_indicator.R
tests/testthat/helper-lambda_indicator.r
tests/testthat/test-CompositeTrend.R
tests/testthat/test-bayesian_meta_analysis.R
tests/testthat/test-bootstrap_indicator.R
tests/testthat/test-lambda_indicator.R
tests/testthat/testmsi.R
tests/testthat/testsimulate_indicator.r
tests/testthat/testtrend_summary_helper_functions.R
vignettes/vignette.Rmd
vignettes/vignette.html
vignettes/vignette.md
