API for BodenmillerGroup/imcRtools
Methods for imaging mass cytometry data analysis
| Global functions | |
|---|---|
| .add_panel | Source code |
| .cpout_add_graph | Source code |
| .cpout_add_image_metadata | Source code |
| .cpout_create_object | Source code |
| .expand_patch | Source code |
| .generateGraph | Source code |
| .generatePlot | Source code |
| .makeNodes | Source code |
| .milieu_function | Source code |
| .polygon_function | Source code |
| .postProcessPlot | Source code |
| .prepare_table | Source code |
| .steinbock_add_image_metadata | Source code |
| .steinbock_read_graphs | Source code |
| .steinbock_read_intensities | Source code |
| .steinbock_read_regionprops | Source code |
| .valid.aggregateNeighbors.input | Source code |
| .valid.binAcrossPixels.input | Source code |
| .valid.buildSpatialGraph.input | Source code |
| .valid.countInteractions.input | Source code |
| .valid.detectCommunity.input | Source code |
| .valid.detectSpatialContext.input | Source code |
| .valid.filterPixels.input | Source code |
| .valid.filterSpatialContext.input | Source code |
| .valid.findBorderCells.input | Source code |
| .valid.minDistToCells.input | Source code |
| .valid.patchDetection.input | Source code |
| .valid.patchSize.input | Source code |
| .valid.plotSpatial.input | Source code |
| .valid.plotSpatialContext.input | Source code |
| .valid.plotSpotHeatmap.input | Source code |
| .valid.readImagefromTXT.input | Source code |
| .valid.readSCEfromTXT.input | Source code |
| .valid.read_cpout.input | Source code |
| .valid.read_steinbock.input | Source code |
| .valid.testInteractions.input | Source code |
| aggregateNeighbors | Man page Source code |
| binAcrossPixels | Man page Source code |
| buildSpatialGraph | Man page Source code |
| countInteractions | Man page Source code |
| detectCommunity | Man page Source code |
| detectSpatialContext | Man page Source code |
| filterPixels | Man page Source code |
| filterSpatialContext | Man page Source code |
| findBorderCells | Man page Source code |
| minDistToCells | Man page Source code |
| patchDetection | Man page Source code |
| patchSize | Man page Source code |
| plotSpatial | Man page Source code |
| plotSpatialContext | Man page Source code |
| plotSpotHeatmap | Man page Source code |
| readImagefromTXT | Man page Source code |
| readSCEfromTXT | Man page Source code |
| read_cpout | Man page Source code |
| read_steinbock | Man page Source code |
| show_cpout_features | Man page Source code |
| testInteractions | Man page Source code |
