Files in Bozorgui/imogene
: Immuno-oncology gene expression associations
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
R/Get_quantile_rank.R
R/calculate_syng_score.R
R/data.R
R/find_a_synergy.R
R/get_angio_score.R
R/get_emt_score.R
R/get_features.R
R/get_ifng_score.R
R/im_boxplot.R
R/im_boxplot_tcga.R
R/im_cor.R
R/im_cor_tcga.R
R/im_netplot.R
R/im_syng.R
R/im_syng_tcga.R
R/imogimap.R
README.html
README.md
data-raw/Census_allFri Apr 2 15_59_27 2021.csv
data-raw/DNA-methylation-based-immune-infiltration-scores.tsv
data-raw/EMTscore_pancan_RNAseq_from_TongPan_original.csv
data-raw/ICT_fractions.csv
data-raw/Immune_landscape_paper.xlsx
data-raw/Pan-Cancer-EMT-Signature-Genes.csv
data-raw/TCGA_all_leuk_estimate.masked.20170107.tsv
data-raw/TCGA_disease.csv
data-raw/TCGA_immune_features.csv
data-raw/data.R
data-raw/gene_list.txt
data-raw/genes_Immune_checkpoints.txt
data-raw/genes_angiogenesis.txt
data-raw/mutation-load_updated.txt
data-raw/mutation-load_updated_2.txt
data-raw/mydataset.R
data-raw/pair_pvalue_CD3.numbers
data-raw/pancan_samples.txt
data-raw/sample_Leukocyte fraction.csv
data-raw/sample_immune_cell_fraction.csv
data-raw/sample_mRNA.csv
data-raw/significant_dysfunction_scores.xlsx
data-raw/single_pvalue_Tcell.numbers
data/.Rapp.history
data/AG_gene_list.rda
data/EMT_gene_list.rda
data/TCGA_IMCell_fraction.rda
data/TCGA_Leukocyte_fraction.rda
data/TCGA_TMB.rda
data/TCGA_disease_list.rda
data/TCGA_immune_features_list.rda
data/icp_gene_list.rda
data/sample_Leukocyte_fraction_data.rda
data/sample_immune_cell_fraction_data.rda
data/sample_mRNA_data.rda
imogimap.Rproj
inst/Tcell_dysfunction_analysis/TCGA_PFIsurvival_UCEC.csv
inst/Tcell_dysfunction_analysis/TCell_dys_genes_ucec.csv
inst/Tcell_dysfunction_analysis/TCell_dys_scores.csv
inst/Tcell_dysfunction_analysis/analysis.R
man/AG_gene_list.Rd
man/EMT_gene_list.Rd
man/TCGA_IMCell_fraction.Rd
man/TCGA_Leukocyte_fraction.Rd
man/TCGA_TMB.Rd
man/TCGA_disease_list.Rd
man/TCGA_immune_features_list.Rd
man/calculate_syng_score.Rd
man/find_a_synergy.Rd
man/get_angio_score.Rd
man/get_emt_score.Rd
man/get_features.Rd
man/get_ifng_score.Rd
man/get_quantile_rank.Rd
man/icp_gene_list.Rd
man/im_boxplot.Rd
man/im_boxplot_tcga.Rd
man/im_cor.Rd
man/im_cor_tcga.Rd
man/im_netplot.Rd
man/im_syng.Rd
man/im_syng_tcga.Rd
man/imogimap.Rd
man/sample_Leukocyte_fraction_data.Rd
man/sample_immune_cell_fraction_data.Rd
man/sample_mRNA_data.Rd
vignettes/.gitignore
vignettes/imogimap-vignette.Rmd
vignettes/syng_network.jpeg
