get_features: Calculates and transforms default immune features within a...
In Bozorgui/imogene: : Immuno-oncology gene expression associations
Description
Usage
Arguments
Details
Value
Examples
Description
Calculates and transforms default immune features within a specified sample cohort .
Usage
1
Arguments
pdf
A numeric data frame or matrix with samples as columns and gene/proteins as rows.
Details
Given a cohort of samples, calculates immune features within the cohort and transforms their values using probability integral transform. The resulting feature values will have a standard uniform distribution between 0,1
Value
A list with two dataframes containing transformed values for immune features and immune cell type fractions as listed in TCGA_immune_features_list.
Examples
1
Bozorgui/imogene documentation built on Feb. 21, 2022, 11:57 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Details Value Examples
Description
Calculates and transforms default immune features within a specified sample cohort .
Usage
1 |
Arguments
pdf |
A numeric data frame or matrix with samples as columns and gene/proteins as rows. |
Details
Given a cohort of samples, calculates immune features within the cohort and transforms their values using probability integral transform. The resulting feature values will have a standard uniform distribution between 0,1
Value
A list with two dataframes containing transformed values for immune features and immune cell type fractions as listed in TCGA_immune_features_list.
Examples
1 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.