get_emt_score: Calculates Epithelial Mesenchymal transition (EMT) score
In Bozorgui/imogene: : Immuno-oncology gene expression associations
Description
Usage
Arguments
Details
Value
Examples
View source: R/get_emt_score.R
Description
Calculates Epithelial Mesenchymal transition (EMT) score
Usage
1
Arguments
pdf
A numeric data frame or matrix with samples as columns and gene/proteins as rows.
Details
To calculate EMT score, gene expressions in EMT_gene_list are weighted by their sign factor to account for the direction of the effect on EMT (See EMT_gene_list for list of genes and their direction of effect). The EMT_score is defined as mean value of modified expressions. Scores are then mean-centered and normalized by standard deviation based on distribution of scores in all samples.
Value
a dataframe of EMT scores for each sample
Examples
1
Bozorgui/imogene documentation built on Feb. 21, 2022, 11:57 a.m.
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Description Usage Arguments Details Value Examples
View source: R/get_emt_score.R
Description
Calculates Epithelial Mesenchymal transition (EMT) score
Usage
1 |
Arguments
pdf |
A numeric data frame or matrix with samples as columns and gene/proteins as rows. |
Details
To calculate EMT score, gene expressions in EMT_gene_list are weighted by their sign factor to account for the direction of the effect on EMT (See EMT_gene_list for list of genes and their direction of effect). The EMT_score is defined as mean value of modified expressions. Scores are then mean-centered and normalized by standard deviation based on distribution of scores in all samples.
Value
a dataframe of EMT scores for each sample
Examples
1 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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