TCGA_IMCell_fraction: Immune cell type fractions for TCGA data
In Bozorgui/imogene: : Immuno-oncology gene expression associations
Description
Usage
Format
Source
Description
CIBERSORT fraction of each 21 immune cell type within immune population. Note that The values are not absolute values and are normalized by the sum of all 21 types as provided by CIBERSORT.
Usage
1
Format
A data frame with 11080 rows and 23 variables:
PATIENT_BARCODEcharacter TCGA patient barcode
B.Cells.Memorydouble fraction of Memory B Cells
B.Cells.Naivedouble Naive B cells
Plasma.Cellsdouble Plasma cells
T.Cells.CD8double CD8 T Cells
T.Cells.CD4.Naivedouble Naive CD4 T Cells
T.Cells.CD4.Memory.Activateddouble Activated Memory CD4 T cells
T.Cells.CD4.Memory.Restingdouble Resting Memory CD4 T cells
T.Cells.Follicular.Helperdouble Helper Follicular T Cells
T.Cells.Regulatory.Tregsdouble Regulatory T cells
T.Cells.gamma.deltadouble Gamma Delta T Cells
NK.Cells.Activateddouble Activated NK Cells
NK.Cells.Restingdouble Resting NK Cells
Monocytesdouble Monocytes
Macrophages.M0double M0 Macrophages
Macrophages.M1double M1 Macrophages
Macrophages.M2double M2 Macrophages
Dendritic.Cells.Restingdouble Resting Dendritic Cells
Dendritic.Cells.Activateddouble Activated Dendritic Cells
Mast.Cells.Activateddouble Activated Mast Cells
Mast.Cells.Restingdouble Resting Mast Cells
Eosinophilsdouble Eosinophils
Neutrophilsdouble Neutrophils
Source
https://cibersort.stanford.edu
Bozorgui/imogene documentation built on Feb. 21, 2022, 11:57 a.m.
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Description Usage Format Source
Description
CIBERSORT fraction of each 21 immune cell type within immune population. Note that The values are not absolute values and are normalized by the sum of all 21 types as provided by CIBERSORT.
Usage
1 |
Format
A data frame with 11080 rows and 23 variables:
PATIENT_BARCODEcharacter TCGA patient barcode
B.Cells.Memorydouble fraction of Memory B Cells
B.Cells.Naivedouble Naive B cells
Plasma.Cellsdouble Plasma cells
T.Cells.CD8double CD8 T Cells
T.Cells.CD4.Naivedouble Naive CD4 T Cells
T.Cells.CD4.Memory.Activateddouble Activated Memory CD4 T cells
T.Cells.CD4.Memory.Restingdouble Resting Memory CD4 T cells
T.Cells.Follicular.Helperdouble Helper Follicular T Cells
T.Cells.Regulatory.Tregsdouble Regulatory T cells
T.Cells.gamma.deltadouble Gamma Delta T Cells
NK.Cells.Activateddouble Activated NK Cells
NK.Cells.Restingdouble Resting NK Cells
Monocytesdouble Monocytes
Macrophages.M0double M0 Macrophages
Macrophages.M1double M1 Macrophages
Macrophages.M2double M2 Macrophages
Dendritic.Cells.Restingdouble Resting Dendritic Cells
Dendritic.Cells.Activateddouble Activated Dendritic Cells
Mast.Cells.Activateddouble Activated Mast Cells
Mast.Cells.Restingdouble Resting Mast Cells
Eosinophilsdouble Eosinophils
Neutrophilsdouble Neutrophils
Source
https://cibersort.stanford.edu
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