API for BrendelGroup/TSRchitect
Promoter identification from large-scale TSS profiling data

Global functions
TSRchitectUsersGuide Man page Source code
TSRmshapeIndex Man page Source code
TSRshapeIndex Man page Source code
addAnnotationToTSR Man page
addAnnotationToTSR,tssObject,character,numeric,numeric,numeric,c Man page
addTagCountsToTSR Man page
addTagCountsToTSR,tssObject,character,numeric,numeric,logical-me Man page
bedToTSS Man page
bedToTSS,tssObject-method Man page
cDNAtoBED Man page
cDNAtoBED,character,character-method Man page
createSummarizedExperiment Man page
createSummarizedExperiment,tssObject,character,numeric,character Man page
detTSR Man page
detTSR,tssObject,character,numeric,numeric,numeric-method Man page
determineTSR Man page
determineTSR,tssObject,numeric,character,character,numeric,numer Man page
getBamData Man page
getBamData,tssObject,numeric-method Man page
getFileNames Man page
getFileNames,tssObject-method Man page
getTSRdata Man page
getTSRdata,tssObject,character,numeric-method Man page
getTSScountData Man page
getTSScountData,tssObject,character,numeric-method Man page
getTSStagData Man page
getTSStagData,tssObject,numeric-method Man page
getTitle Man page
getTitle,tssObject-method Man page
importAnnotationExternal Man page
importAnnotationExternal,tssObject,character,character-method Man page
importAnnotationHub Man page
importAnnotationHub,tssObject,character,character,character,char Man page
inputToTSS Man page
inputToTSS,tssObject-method Man page
loadTSSobj Man page
loadTSSobj,character,character,ANY,ANY,character,numeric-method Man page
makeGRangesFromTSR Man page
makeGRangesFromTSR,tssObject,character,numeric-method Man page
mergeSampleData Man page
mergeSampleData,tssObject-method Man page
prcTSS Man page
processTSS Man page
processTSS,tssObject,numeric,character,logical-method Man page
tagCountTSS Man page Source code
tsrCluster Man page Source code
tssArrayProperties Man page Source code
tssObject Man page Source code
writeTSR Man page
writeTSR,tssObject,character,numeric,character-method Man page
BrendelGroup/TSRchitect documentation built on July 14, 2018, 10:57 a.m.