Files in BrendelGroup/TSRchitect
Promoter identification from large-scale TSS profiling data

DESCRIPTION
INSTALL.md
LICENSE
NAMESPACE
NEWS
R/Allclasses.R R/Get-methods.R R/Show-methods.R R/TSRchitectUsersGuide.R R/addAnnotationToTSR.R R/addTagCountsToTSR.R R/bedToTSS.R R/clustering-functions.R R/createSummarizedExperiment.R R/detTSR.R R/determineTSR.R R/gsq2bed.R R/importAnnotationExternal.R R/importAnnotationHub.R R/inputToTSS.R R/loadTSSobj.R R/makeGRangesFromTSR.R R/mergeSampleData.R R/prcTSS.R R/processTSS.R R/writeTSR.R R/writeTSS.R README.md
Singularity
demo/HOWTO.md
demo/xdemo1
demo/xdemo2
demo/xdemo3
inst/CITATION
inst/doc/TSRchitectUsersGuide.Rmd
inst/doc/TSRchitectUsersGuide.html
inst/doc/TSRchitectUsersGuide.pdf
inst/extdata/AtEST.gsq
inst/extdata/Perl/gsq2bed.pl
inst/extdata/bamFiles/sample1-rep1.bam
inst/extdata/bamFiles/sample1-rep2.bam
inst/extdata/bamFiles/sample2-rep1.bam
inst/extdata/bamFiles/sample2-rep2.bam
inst/extdata/bedFiles/sample1-rep1.bed
inst/extdata/bedFiles/sample1-rep2.bed
inst/extdata/bedFiles/sample2-rep1.bed
inst/extdata/bedFiles/sample2-rep2.bed
inst/extdata/gencode.v19.chr22.transcript.gff3
inst/extdata/tssObjectExample.RData
man/TSRchitectUsersGuide.Rd man/TSRmshapeIndex.Rd man/TSRshapeIndex.Rd man/addAnnotationToTSR-methods.Rd man/addTagCountsToTSR-methods.Rd man/bedToTSS-methods.Rd man/createSummarizedExperiment-methods.Rd man/detTSR-methods.Rd man/determineTSR-methods.Rd man/getBamDataFirstRead-methods.Rd man/getBamDataLastRead-methods.Rd man/getFileNames-methods.Rd man/getTSRdata-methods.Rd man/getTSScountData-methods.Rd man/getTSStagData-methods.Rd man/getTitle-methods.Rd man/gsq2bed-methods.Rd man/importAnnotationExternal-methods.Rd man/importAnnotationHub-methods.Rd man/inputToTSS-methods.Rd man/loadTSSobj-methods.Rd man/makeGRangesFromTSR-methods.Rd man/mergeSampleData-methods.Rd man/prcTSS.Rd man/processTSS-methods.Rd man/tagCountTSS.Rd man/tsrCluster.Rd man/tssArrayProperties.Rd man/tssObject.Rd man/writeTSR-methods.Rd man/writeTSS-methods.Rd vignettes/TSRchitect.Rmd
BrendelGroup/TSRchitect documentation built on Nov. 15, 2019, 11:29 a.m.