initialize-model-method: Initialize object of class 'model'

In BussemakerLab/SelexGLM: Functions for performing feature-based analyis of SELEX-seq data using generalized linear models

Description

Initializes an S4 class to represent full model features

Usage

## S4 method for signature 'model'
initialize(.Object, name, varRegLen, leftFixedSeq,
  rightFixedSeq, seedLen, consensusSeq, leftFixedSeqOverlap,
  rightFixedSeqOverlap, affinityType, numViews, rounds, confidenceLevel,
  minAffinity, missingValueSuppression, minSeedValue, regressionFormula,
  iteration, upFootprintExtend, downFootprintExtend, rcSymmetric,
  includeDNAstrand, includeView, includeShape, useFixedValuesOffset.N,
  useFixedValuesOffset.Shape, exUpBases, exDownBases, fpLen, shapeParamsUsed,
  shapeTable, features, verbose, dateInitialized, dateBetasLastAdded,
  dateLastModified, N, Intercept, Shape, N.upFootprintExtend,
  N.downFootprintExtend, N.set, N.values, N.errors, N.z, N.sig, N.oldValues,
  N.oldErrors, N.oldZ, N.oldSig, N.equivMat, I.values, I.errors, I.z, I.sig,
  I.oldValues, I.oldErrors, I.oldZ, I.oldSig, Shape.upFootprintExtend,
  Shape.downFootprintExtend, Shape.set, Shape.values, Shape.errors, Shape.z,
  Shape.sig, Shape.oldValues, Shape.oldErrors, Shape.oldZ, Shape.oldSig,
  Shape.equivMat, ...)

Arguments

model

Object of class 'model'

BussemakerLab/SelexGLM documentation built on May 17, 2019, 5:41 p.m.