In CAPLTER/capeml: CAP LTER package for generating EML

knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>"
)

library(capeml)

# Include Mermaid JavaScript library
htmltools::tags$script(src = "https://cdn.jsdelivr.net/npm/mermaid/dist/mermaid.min.js")

# Initialize Mermaid
htmltools::tags$script("mermaid.initialize({startOnLoad:true});")

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capeml pipeline for constructing EML type spatialRaster

# Mermaid rasters diagram
DiagrammeR::mermaid(
  diagram = '
---
  config:
  themeVariables:
      fontSize: 24px 
---

flowchart LR
    A["capemlGIS::create_raster()"]
    A --> E["my_raster_SR
        <i>(temp object in R env)</i>    
    "]
    E --> D["capeml::create_dataset()"]
    G["my_raster.tif
        <i>(on disk)</i>
    "] --> A

subgraph J["annotations & units"]
    direction LR
    B["annotations.yaml"]
    C["custom_units.yaml
        <i>(edit if needed)</i>
    "]
end

A --> |"if (a) custom or QUDT units, or (b) other annotations"|J
J --> D

subgraph I ["raster metadata"]
    F["my_raster_attrs.yaml
        <i>(if relevant)</i>
    "]
    H["my_raster_factors.yaml
        <i>(if relevant)</i>
    "]
    F <--> |-- OR --|H
end

I --> A

linkStyle default stroke:grey, stroke-width:4px
',
width = 1020
)