Man pages for CBIIT-CGBB/GCluster
Graph Based Cluster
| branch_list | get the branch vertex list |
| color_bar | Plot color bar |
| ctGCluster | contour graph visualization |
| df2g | convert data frame to igraph object with weights |
| GCluster | graph based cluster 2 |
| hcGCluster | Hierarchical clustering by cluster |
| i2g | convert 2D image into digital coordinates |
| list4color | map colors on list |
| m2i | get index by cutoff from matrix of corralation coefficent or... |
| m2p | quick calculate corralation coefficent and p value with big... |
| merge_cluster | merge cluster |
| mgGCluster | merge cluster |
| mlGCluster | get the gene features by random forest given cluster |
| mstGCluster | graph based cluster |
| mst_plot | plot a graph removed edges by weight |
| plot2_gcGCluster | Plot hierarchical clustering by cluster in circle |
| plot_gcGCluster | Plot hierarchical clustering by cluster |
| plotGCluster | mapping gene expression on tsne |
| plottjGCluster | mapping gene expression on trajectory tree |
| preGCluster | graph based cluster 2 |
| shadowtext | plot shadow text |
| simGCluster | graph simulation |
| simGCluster2 | graph simulation |
| smlayout | trajectory analysis |
| smlayout2 | trajectory analysis |
| tjGCluster | trajectory analysis |
| tjGCluster2 | trajectory analysis |
| treeGCluster | graph visualization |
| tree_list | get the tree vertex list |
| tsneGCluster | do tsne |
| vizGCluster | graph visualization |
| wc_plot | plot a graph removed edges by weight |
