plotGCluster: mapping gene expression on tsne

In CBIIT-CGBB/GCluster: Graph Based Cluster

mapping gene expression on tsne

Description

mapping gene expression on tsne

Usage

  plotGCluster(dat, coord, gene, col.g=list(c1=c(0,1,1), c2=c(0,1,0), c3=c(1,1,0), alpha=0.6)
               , col.m=rgb(0.6, 0.6, 0.6, 0.4), col.b.p=c(-20, -20, -15, -15), pch=19, cex=0.4, 
               color.spec="rgb", ...)

Arguments

dat	gene expression matrix/data.frame, column is for sample
coord	single cell coordinates from tsne
gene	gene(s) should be in column names
col.g	color names for gene expression
col.m	color names for gene expression, the values are zero or NA
col.b.p	color bar position
pch	from plot
cex	from plot
color.spec	from color.scale of plotrix
...	more options of the plot

Author(s)

Ying Hu <[e-mail]> Chunhua Yan <[e-mail]>

References

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Examples

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CBIIT-CGBB/GCluster documentation built on Oct. 26, 2023, 4:27 a.m.