plottjGCluster: mapping gene expression on trajectory tree

In CBIIT-CGBB/GCluster: Graph Based Cluster

mapping gene expression on trajectory tree

Description

mapping gene expression on trajectory tree

Usage

  plottjGCluster(dat, gene, method="median", col.g=list(c1=c(0,1,1), c2=c(0,1,0), c3=c(1,1,0), 
                 alpha=0.6), col.b.p, l1, l2, level1, coord, col.bg, l.n, color.spec="hsv", ...);

Arguments

dat	gene expression matrix/data.frame, column is for sample
gene	gene(s) should be in row names
method	mean or median
col.g	color names for gene expression
col.b.p	color bar position
l1	level 1 branch layout (matrix/data.frame)
l2	level 2 branch layout (list)
level1	samples in level 1 as list
coord	coordinates of samples (output of tsne)
col.bg	background color
l.n	level 2 samples from smlayout2 (list)
color.spec	color.spec by plotrix
...	more options of the plot

Author(s)

Ying Hu <[e-mail]> Chunhua Yan <[e-mail]>

References

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Examples

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CBIIT-CGBB/GCluster documentation built on Oct. 26, 2023, 4:27 a.m.