Man pages for CBMR-Single-Cell-Omics-Platform/SCOPfunctions
Single Cell Omics Platform Functions
| DE_MAST_RE_seurat | MAST differential expression test with random effect for... |
| dot-countsperclus | Compute counts per cluster |
| dot-dub_cutoff | A subroutine of prep_intrahash_doub to compute number of... |
| FoldChange | Compute average log fold changes |
| f_VIF | Compute Variance Inflation Factors for gene sets |
| geneset_embed | Generate activity scores (embeddings) for a feature set in a... |
| geneset_embed_list_seurat | Generate activity scores (embeddings) for a list of feature... |
| geneset_VIF | Compute Variance Inflation Factors for gene sets |
| plot_barIdentGroup | Generate barplot of identity group composition |
| plot_network | make a network plot of a set of co-expressed features |
| plot_vlnGrid | Make grid of violin plots |
| prep_HTO_q_area_plot | Make an area plot of proportions of cells assigned to... |
| prep_intrahash_doub | Estimate intra-hashtag doublets by finding cells whose... |
| prep_qc_rna | Perform QC on RNA, classifying cells as keepers or outliers... |
| remap | Map dataframe column, vector, or list of vectors |
| utils_big_as.matrix | Convert a large sparse matrix into a dense matrix without... |
| utils_detachAllPkgs | Detach all packages from current session |
| utils_detectCoresRAM | Detect cores with RAM constraints |
| utils_dlFile | Check if a file matches given hash, else download it and... |
| utils_printObjectSizes | Show the memory size of the top n objects |
| utils_saveMeta | Save file with metadata |
| utils_verboseFnc | Wrapper to make a function more verbose |
