dot-countsperclus: Compute counts per cluster
In CBMR-Single-Cell-Omics-Platform/SCOPfunctions: Single Cell Omics Platform Functions
Description
Usage
Arguments
Details
Author(s)
Description
subroutine
Usage
1
.countsperclus(object, group, assay = NULL, slot = NULL, min.cell = 100)
Arguments
group
define groups which you want to split; default is srt ident
srt
seurat object
compare
vector of groups you want to compare #add in
Details
.. content for
goal of this function is to find genes that are specifically expressed in each cluster, it is also
significantly faster than the FindMarkers function from Seurat
(no empty lines) ..
.. content for
pseudobulk calculation inspired by: https://jef.works/blog/2020/04/06/quickly-creating-pseudobulks/
weighted log odds from: https://github.com/juliasilge/tidylo
Author(s)
dylanmr
CBMR-Single-Cell-Omics-Platform/SCOPfunctions documentation built on May 29, 2021, 3:52 p.m.
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Description Usage Arguments Details Author(s)
Description
subroutine
Usage
1 | .countsperclus(object, group, assay = NULL, slot = NULL, min.cell = 100)
|
Arguments
group |
define groups which you want to split; default is srt ident |
srt |
seurat object |
compare |
vector of groups you want to compare #add in |
Details
.. content for goal of this function is to find genes that are specifically expressed in each cluster, it is also significantly faster than the FindMarkers function from Seurat (no empty lines) ..
.. content for pseudobulk calculation inspired by: https://jef.works/blog/2020/04/06/quickly-creating-pseudobulks/ weighted log odds from: https://github.com/juliasilge/tidylo
Author(s)
dylanmr
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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