Man pages for CDecamps/penda
A R package that performs personalized differential analysis of comics data
| choose_quantile | Test gene expression variations with the quantile test for... |
| choose_threshold | Test gene expression variations for multiple thresholds in a... |
| complex_simulation | Simulation of dysregulation that takes in account real datas |
| compute_LH_cpp | compute_LH_cpp |
| compute_LH_cppNA | compute_LH_cppNA |
| compute_lower_and_higher_lists | Compute L and H list in control samples. |
| compute_lower_and_higher_lists_1ctrl | Compute L and H list in control sample. |
| detect_na_value | Find NA values |
| detect_zero_value | Find low values |
| draw_penda | Draw penda |
| draw_results | Graphic representation of the simulation results |
| DU_rearrangement | Reorganization of results matrix after the multiple test. |
| group_genes | Group genes with similar expression |
| make_dataset | Making the Penda Dataset |
| make_dataset_1ctrl | Making the Penda Dataset for one control samples |
| penda_data_case | Expression matrix of cases |
| penda_data_ctrl | Expression matrix of controls |
| penda_test | Test gene expression variations in a serie of samples |
| penda_test_1ctrl | Test gene expression variations in a serie of samples |
| quantile_test | Simple test of gene expression variations in a serie of... |
| regulation_test | Test gene expression variation for a given gene |
| regulation_test_1ctrl | Test gene expression variation for a given gene |
| results_simulation | Compare the results of the test on the simulation to the... |
| sample_test | Test gene expression variations for a given sample |
| sample_test_1ctrl | Test gene expression variations for a given sample |
| select_quantile_param | Select the better factor and quantile to reach a given FDR. |
| select_threshold_param | Select the better threshold to reach a given FDR. |
| simplified_simulation | Simplified simulation of data deregulation. |
| test_multiple_thresholds | Test gene expression variations for multiple thresholds |
