detect_zero_value: Find low values

In CDecamps/penda: A R package that performs personalized differential analysis of comics data

Find low values

Description

This function detects genes with more than 'threshold' percent of expression values under the min value. NA expression values are not considered.

Usage

detect_zero_value(controls, data_case, threshold, min = 0)

Arguments

controls	The first matrix with datas to analyze (ex: controls samples).
data_case	The second matrix with datas to analyze (ex: tumors samples).
threshold	The maximum proportion of expression under 'min' tolerated for each gene.
min	The minimum value accepted.

Value

This function returns a True/False vector with True for the values to exclude.

Examples

# Example for detect_zero_value function
data_ctrl = penda::penda_data_ctrl
data_case = penda::penda_data_case
null_values = penda::detect_zero_value(data_ctrl, data_case, threshold = 0.99, min = 10)
data_ctrl_f = data_case[!null_values,]
data_case_f = data_case[!null_values,]

CDecamps/penda documentation built on March 29, 2024, 3:26 a.m.