calculateNoiseRatios | Calculate noise ratios |
calculateS50 | Calculate S50. |
calculateURI | calculate URI |
doubleXchr | double the values of X chr (for human male samples) |
normalizeRS | Normalize Repli-seq assay |
readRS | Read Repli-seq assay data (bedgraph format). |
removeNoise | remove Noise |
rescaleRS | rescale Repli-seq assay |
smoothRS | smooth Repli-seq assay |
weight_phases | Weighting phases |
writeBedgraph | Write Bedgraph files of Repli-seq assays |
writeBigwig | Write BigWig files of Repli-seq assays |
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