writeBigwig: Write BigWig files of Repli-seq assays

Description Usage Arguments

View source: R/writeBigWig.R

Description

writes one BigWig file per fraction in the provided Repli-seq assay

Usage

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writeBigwig(
  rs_assay,
  path_file,
  sample_name,
  chromsizes,
  wiggle_start,
  wiggle_step,
  wiggle_span,
  system_separator = "/"
)

Arguments

rs_assay

a Repli-seq assay (data.frame) loaded with readRS() and formatted as chr,start,stop,S1,...,Sx (or S0)

path_file

a path to the files to write

sample_name

a string for the file names

chromsizes

path to the chromsizes file to pass to WigToBigWig as argument

wiggle_start

a numeric value for wiggle header

wiggle_step

a numeric value for wiggle header

wiggle_span

a numeric value for wiggle header

system_separator

default is "/" as dedicated for linux file system


CL-CHEN-Lab/RepliSeq documentation built on Sept. 11, 2021, 12:04 p.m.