smoothRS: smooth Repli-seq assay
In CL-CHEN-Lab/RepliSeq: Repliseq
Description
Usage
Arguments
Value
Description
Calculate the smoothed count matrices of a Repli-seq assay
Usage
1
smoothRS(rs_assay, smooth_factor)
Arguments
rs_assay
a dataframe for a Repli-seq assay loaded with readRS()
smooth_factor
the factor to apply to the scale (going from 1kb to 50kb gives smooth_factor = 50 ; from 50kb to 100kb : smooth_factor = 2)
Value
a dataframe composed of genomic coordinates plus all the fractions from rs_assay as for example : chr,start,stop,S1,S2,S3,S4,S5,S6
CL-CHEN-Lab/RepliSeq documentation built on Sept. 11, 2021, 12:04 p.m.
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Description Usage Arguments Value
Description
Calculate the smoothed count matrices of a Repli-seq assay
Usage
1 | smoothRS(rs_assay, smooth_factor)
|
Arguments
rs_assay |
a dataframe for a Repli-seq assay loaded with readRS() |
smooth_factor |
the factor to apply to the scale (going from 1kb to 50kb gives smooth_factor = 50 ; from 50kb to 100kb : smooth_factor = 2) |
Value
a dataframe composed of genomic coordinates plus all the fractions from rs_assay as for example : chr,start,stop,S1,S2,S3,S4,S5,S6
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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