Description Usage Arguments Value Author(s) See Also
View source: R/adjMatrixTermsAncestors.R
Function to return the adjacency matrix of input GO term numbers in specified ontology.
1 | adjMatrixTermsAncestors(GOtermNrInclAncestors, OntologyNr = 1)
|
GOtermNrInclAncestors |
Numeric;
Vector of GO term numbers of GO terms and their
ancestors up to the root in gene ontology specified
by |
OntologyNr |
Numeric; Default: 1 To select the ontology. One of 1 for biological process, 2 for molecular function or 4 for cellular component. |
AdjMatrix |
Numeric; Adjacency matrix of GOtermNrInclAncestors. AdjMatrix[i,j] == 1 iff GO term i is parent of GO term j. Named by GOtermIds. |
GOtermNrs |
Numeric; The GO term numbers corresponding to rows and columns of AdjMatrix. |
CL
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