Files in CLippmann/dbtORA
Overrepresentation Analysis
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
ORA.Rproj
R/EvidenceCode2Key.R
R/GOroot2TermPaths.R
R/MaxPathL2Leaf.R
R/MaxPathL2Root.R
R/MinPathL2Leaf.R
R/MinPathL2Root.R
R/NCBI2GeneName.R
R/ORA.R
R/ORAfilename.R
R/OntoName2No.R
R/ReadLRN.R
R/ReadNAMES.R
R/ReadSparseMatrix.R
R/ReadTXT.R
R/WriteLRN.R
R/WriteNAMES.R
R/WriteORAresults.R
R/WriteSparseMatrix.R
R/addext.R
R/adjMatrixTermsAncestors.R
R/ask2loadFile.R
R/certainty.R
R/checkFilename.R
R/checkORAparameters.R
R/dbtORA.R
R/drawORA.R
R/hypergeoTest.R
R/importance.R
R/infoValue.R
R/ontologyNr.R
R/plotGOgraph.R
R/remarkableness.R
R/sortby.R
R/termDescription.R
R/termId.R
R/termNr.R
R/termpathsHeadlines.R
R/termsAncestors.R
R/updateORAdatabase.R
README.md
inst/doc/Vignette_V2.R
inst/doc/Vignette_V2.Rmd
inst/doc/Vignette_V2.html
inst/extdata/AdjBPsparseMatrix.lrn
inst/extdata/AdjBPsparseMatrix.names
inst/extdata/AdjCCsparseMatrix.lrn
inst/extdata/AdjCCsparseMatrix.names
inst/extdata/AdjMFsparseMatrix.lrn
inst/extdata/AdjMFsparseMatrix.names
inst/extdata/AllAnnNCBIsPlusGeneName.names
inst/extdata/BPAncestorsSparseMatrix.lrn
inst/extdata/BPAncestorsSparseMatrix.names
inst/extdata/CCAncestorsSparseMatrix.lrn
inst/extdata/CCAncestorsSparseMatrix.names
inst/extdata/EvidenceCodes.names
inst/extdata/ExampleNCBInamesFile.names
inst/extdata/GOAall.lrn
inst/extdata/GOTermInfosBP.lrn
inst/extdata/GOTermInfosCC.lrn
inst/extdata/GOTermInfosMF.lrn
inst/extdata/MFAncestorsSparseMatrix.lrn
inst/extdata/MFAncestorsSparseMatrix.names
man/GOroot2TermPaths.Rd
man/NCBI2GeneName.Rd
man/ORA-package.Rd
man/ORA.Rd
man/ORAfilename.Rd
man/WriteORAresults.Rd
man/adjMatrixTermsAncestors.Rd
man/certainty.Rd
man/checkORAparameters.Rd
man/dbtORA.Rd
man/drawORA.Rd
man/hypergeoTest.Rd
man/importance.Rd
man/infoValue.Rd
man/ontologyNr.Rd
man/plotGOgraph.Rd
man/remarkableness.Rd
man/termDescription.Rd
man/termId.Rd
man/termNr.Rd
man/termpathsHeadlines.Rd
man/termsAncestors.Rd
man/updateORAdatabase.Rd
vignettes/Vignette_V2.Rmd
