adjMatrixTermsAncestors: Function to return the adjacency matrix of input GO term...

Description Usage Arguments Value Author(s) See Also

Description

Function to return the adjacency matrix of input GO term numbers in specified ontology.

Usage

1
adjMatrixTermsAncestors(GOtermNrInclAncestors, OntologyNr = 1)

Arguments

GOtermNrInclAncestors

Numeric; Vector of GO term numbers of GO terms and their ancestors up to the root in gene ontology specified by OntologyNr.

OntologyNr

Numeric; Default: 1 To select the ontology. One of 1 for biological process, 2 for molecular function or 4 for cellular component.

Value

AdjMatrix

Numeric; Adjacency matrix of GOtermNrInclAncestors. AdjMatrix[i,j] == 1 iff GO term i is parent of GO term j. Named by GOtermIds.

GOtermNrs

Numeric; The GO term numbers corresponding to rows and columns of AdjMatrix.

Author(s)

CL

See Also

termsAncestors.


CLippmann/dbtORA documentation built on May 26, 2019, 6:40 a.m.