Description Usage Arguments Value Author(s) See Also
Function calculates the partial Shannon information of gene sets in GO terms explaining how informative a certain term in the context of all terms is.
1 |
NrOfAnnotationsInTerm |
Numeric; Vector of numbers of genes annotated to corresponding GO terms. |
NrOfGenesInUniverse |
Numeric; Default: max(NrOfAnnotationsInTerm) Number of genes in universe. (If not restricted to reference set, NrOfGenesInUniverse is the same as the number of genes (directly + indirectly) annotated to the root.) |
InfoValue |
Numeric; A value for each term that describes how informative that term is. |
InfoValueP |
Numeric; The ratio of NrOfAnnotationsInTerm/NrOfGenesInUniverse for each term which is the empirical probability of occurrence. |
CL
certainty
,
importance
,
remarkableness
.
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