Man pages for CMET-UGent/CMETNGS
Convenience functions for CMET NGS automated pipeline
| Analyze_Sangers | Preprocessing and annotation of Sanger sequencing of the 16S... |
| cbindPad | function to combine unequal-length data frames (or vectors)... |
| circleFun | function to draw a circle |
| colcurveg | Function to process mothur generated alpha-diversity... |
| coldiss | Color plots of a dissimilarity matrix, without and with... |
| construct_phyloseq | Function to automatically generate a phyloseq object from... |
| df2fasta | Conversion of data frames with correct layout to fasta files. |
| fasta2dataframe | Conversion of (mothur) fasta files to a dataframe |
| getconsensus | Parsing function for consensus as found by... |
| gg_color_hue | function to generate ggplot-like color pallettes |
| highqualgraphR | Publication-grade export of ggplot2 object |
| intersect2 | Intersection function for two character vectors |
| KimPalettes | Request discrete color palettes created by Kim De Paepe |
| makebargraphrawggplot2 | ggplot2-based cummulative stacked bargraphs for plotting... |
| MakeEDABargraphs | Function to automatically generate a few Phyloseq bargraphs... |
| MakeExcelReport | Function to automatically generate the Excel-export OTU table |
| myround | Alternative rounding function |
| ordin_annotate | Create color and shape annotation for base vegan ordination... |
| ordin_annotatedplot | Create an annotated ordination graph |
| ordin_legend | Create legend for base vegan ordination plots |
| otureps | A dataframe called "outreps" with sequence identifiers and... |
| preformattax | Reformatter of taxonomy files from mothur for use in R |
| readmerger | Support function for merging abifldr objects primary... |
