coldiss: Color plots of a dissimilarity matrix, without and with...

In CMET-UGent/CMETNGS: Convenience functions for CMET NGS automated pipeline

Description

This function generates color plots of dissimilarity matrices, with our without ordering. It was supplied as supplementary data to "Numerical ecology with R" Boccard & Legendre, 2012. And authored by Francois Gillet.

Usage

coldiss(D, nc = 4, byrank = TRUE, diag = FALSE)

Arguments

D	dissimilarity matrix. If D is not a dissimilarity matrix (max(D)>1), then D is divided by max(D)
nc	number of colors (classes, defaults to 4)
byrank	specifiy either equal-sized classes (TRUE) or equal-length intervals (FALSE). Defaults to TRUE
diag	print object labels on the diagonal (defaults to FALSE)

Examples

## Short example

# coldiss(spe.dj, nc=9, byrank=F, diag=T)
# Original author: Francois Gillet, 23 aug 2012

CMET-UGent/CMETNGS documentation built on Dec. 12, 2020, 8:22 a.m.