readmerger: Support function for merging abifldr objects primary...
In CMET-UGent/CMETNGS: Convenience functions for CMET NGS automated pipeline
Description
Usage
Arguments
Value
Examples
Description
Support function for merging abifldr objects primary sequences
Usage
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readmerger(
fwdfile,
revfile,
samplename,
onefile = FALSE,
outputfolder = "Results"
)
Arguments
fwdfile
path to forward ab1 file
revfile
path to reverse ab1 file
samplename
name for fasta identifier/file name for merged read
onefile
whether or not to write out one fasta file with all consensus
reads (defaults to FALSE)
outputfolder
path to output folder
Value
a list containing the sample, consensus length and consensus seq
Examples
1
##Simple example
CMET-UGent/CMETNGS documentation built on Dec. 12, 2020, 8:22 a.m.
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Description Usage Arguments Value Examples
Description
Support function for merging abifldr objects primary sequences
Usage
1 2 3 4 5 6 7 | readmerger(
fwdfile,
revfile,
samplename,
onefile = FALSE,
outputfolder = "Results"
)
|
Arguments
fwdfile |
path to forward ab1 file |
revfile |
path to reverse ab1 file |
samplename |
name for fasta identifier/file name for merged read |
onefile |
whether or not to write out one fasta file with all consensus reads (defaults to FALSE) |
outputfolder |
path to output folder |
Value
a list containing the sample, consensus length and consensus seq
Examples
1 | ##Simple example
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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