R/data.R

In CMPG/signet: signet: Selection Inference in Gene NETworks

#' Example of gene selection scores.
#'
#' A dataset of gene selection scores.
#'
#' These gene scores are the one used in Daub et al. (2013). For a set of SNPs,
#' a z-score has been computed to represent an overall genetic differentiation
#' among several human populations. A gene score corresponds to the maximal
#' value among SNPs located within a given gene.
#'
#' The table has been generated using the pipeline described here
#' ("Human populations project"): https://github.com/CMPG/polysel
#'
#' @format A data frame with 17918 rows and 2 variables:
#' \describe{
#'     \item{gene}{Gene identifier (Entrez gene ID)}
#'     \item{score}{Gene selection score}
#'     ...
#' }
#' @source Daub, J. T., Hofer, T., Cutivet, E., Dupanloup, I.,
#' Quintana-Murci, L., Robinson-Rechavi, M., & Excoffier, L. (2013). Evidence
#' for polygenic adaptation to pathogens in the human genome. Molecular biology
#' and evolution, 30(7), 1544-1558.
"scores"
#' Pathway examples.
#' See \code{browseVignettes("signet")} to see how to prepare the pathways for
#' running simulated annealing.
"kegg_human"