Description Usage Arguments Details Value
Carries out common sequence diversity and distance calculations on individuals or populations.
1 2 | popStatWindows(fileName, contigs = "all", winSize = 1e+05, minSites,
ploidy = 2, stat = c("dxy", "pi", "da"), pops, nCores = 1)
|
fileName |
A |
contigs |
|
winSize |
|
minSites |
|
ploidy |
|
stat |
|
pops |
|
nCores |
|
As reading in the variant data is currently the runtime bottleneck it is advised to run all statistics
simultaniously to reduce overall runtime.
dxy
: Nei's absolute distance between two populations X and Y.
pi
: Nei's within populaition nucleotide diversity.
da
: Nei's net genetic distance between two populations X and Y
Dt
: Tajimas D neutrality test.
A tibble
containing populations statistics passed from stat
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.