doMoa: doMoa

In CNRGH/crimmix: Multi-omics Integration

Description

doMoa

Usage

doMoa(data, K, ncomp = 2, k = 0.05)

Arguments

data	List of matrices.
K	Number of clusters
ncomp	An integer; the number of components to calculate. To calculate more components requires longer computational time.
k	The absolute number (if k >= 1) or the proportion (if 0<k<1) of non-zero coefficients for the variable loading vectors. It could be a single value or a vector has the same length as x so the sparsity of individual matrix could be different.

Value

a list of clust the clustering of samples and fit the results of the method intNMF#' @export

Examples

set.seed(333)
c_1 <- simulateY(J=100, prop=0.1, noise=1)
c_2 <- simulateY(J=200, prop=0.1, noise=1)
c_3 <- simulateY(J=50, prop=0.1,  noise=0.5)
data <- list(c_1$data , c_2$data , c_3$data)
res <- doMoa(data,K=4)

CNRGH/crimmix documentation built on Dec. 11, 2019, 5:27 a.m.