Files in CNRGH/pintmf
Penalized Integrative Matrix Factorization for Multiomics Data
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
NEWS
R/PVE.R
R/SolveInt.R
R/buildWeightMatrix.R
R/data.R
R/doSNF.R
R/get.W.supervised.R
R/getH.R
R/getW.R
R/modelSelection.R
README.md
data/bxd.rda
data/data_vignette.rda
data/status.rda
data/status_2.rda
data_GBM/clinical.cases_selection.2018-07-11.tar.gz
data_GBM/clinical.cases_selection.2018-07-11/._IDH1-Sample-Status.txt
data_GBM/clinical.cases_selection.2018-07-11/._clinical.tsv
data_GBM/clinical.cases_selection.2018-07-11/._exposure.tsv
data_GBM/clinical.cases_selection.2018-07-11/IDH1-Sample-Status.txt
data_GBM/clinical.cases_selection.2018-07-11/clinical.tsv
data_GBM/clinical.cases_selection.2018-07-11/exposure.tsv
data_GBM/gbm_tcga_pub2013_clinical_data.tsv
docs/Manuscript.pdf
docs/Supplementary.pdf
inst/CITATION
inst/Simulations/00.setup.R
inst/Simulations/02.RunMethods.R
inst/Simulations/03.ComputeClustering.R
inst/Simulations/04.ROCeval.R
inst/Simulations/05.RunMethods.R
inst/Simulations/06.ModelSelection.R
inst/Simulations_OMICSSMILA/00.setup.R
inst/Simulations_OMICSSMILA/01.run_PintMF.R
inst/Simulations_OMICSSMILA/01.run_PintMF_v2.R
inst/Simulations_OMICSSMILA/01.run_others.R
inst/Simulations_OMICSSMILA/02.metrics.R
inst/Simulations_OMICSSMILA/useful_function.R
man/PVE.Rd
man/SolveInt.Rd
man/buildWeightMatrix.Rd
man/bxd.Rd
man/computeLL.Rd
man/compute_BIC.Rd
man/compute_coph.Rd
man/data_vignette.Rd
man/get.H.Rd
man/get.W.Rd
man/get.W.supervised.Rd
man/init_SNF.Rd
man/status.Rd
man/status_2.Rd
multiOM.Rproj
tests/testthat.R
tests/testthat/test_consistency_getH.R
tests/testthat/test_consistency_getW.R
tests/testthat/test_solveInt.R
vignettes/Bootstrap.Rmd
vignettes/GBM_analysis.Rmd
vignettes/Init_influence.Rmd
vignettes/Review.Rmd
vignettes/Review.html
vignettes/Review.pdf
vignettes/bxd.Rmd
vignettes/microbenchmark.Rmd
vignettes/vignette.Rmd
