ProcessedQuant: The ProcessedQuant class The ProcessedQuant class is designed...

In COMBINE-lab/roe: R utilities for alevin-fry

The ProcessedQuant class The ProcessedQuant class is designed to represent the details of preprocessed dataset from the 10x-requant project. To initialize a ProcessedQuant class, run ProcessedQuant(dataset_id) where dataset_id is the id of an available dataset. Run print_available_datasets() for obtaining the id of all available datasets. The instantiated ProcessedQuant object needs to go through some function calls, i.e, fetch_quant(), decompress_quant() and load_quant() to become a complete ProcessedQuant class, in which the sce slot contains the SingleCellExperiment object of the quantification result of the dataset. information of a specific dataset.

Description

The ProcessedQuant class The ProcessedQuant class is designed to represent the details of preprocessed dataset from the 10x-requant project. To initialize a ProcessedQuant class, run ProcessedQuant(dataset_id) where dataset_id is the id of an available dataset. Run print_available_datasets() for obtaining the id of all available datasets. The instantiated ProcessedQuant object needs to go through some function calls, i.e, fetch_quant(), decompress_quant() and load_quant() to become a complete ProcessedQuant class, in which the sce slot contains the SingleCellExperiment object of the quantification result of the dataset. information of a specific dataset.

Usage

ProcessedQuant(dataset_id)

Arguments

dataset_id

the id of an available dataset.

COMBINE-lab/roe documentation built on Nov. 8, 2022, 5:23 p.m.