decompress_quant: decompress the fetched quantification result of a specific...

In COMBINE-lab/roe: R utilities for alevin-fry

decompress the fetched quantification result of a specific dataset and record the path as the quant_path slot of the returned processed_quant list This function must be run after fetch_quant()

Description

decompress the fetched quantification result of a specific dataset and record the path as the quant_path slot of the returned processed_quant list This function must be run after fetch_quant()

Usage

decompress_quant(
  processed_quant,
  quant_dir = "processed_quant",
  quant_path_name = NULL,
  force = FALSE,
  quiet = FALSE
)

Arguments

processed_quant	a ProcessedQuant class object recording the details of a dataset. Initialized by ProcessedQuant(dataset_id)
quant_dir	a string to a path where the fetched tar files will be stored. It will be created if does not exist.
quant_path_name	a string indicates the name of the directory that will be used for storing the quantification result. If NULL, the dataset_id will be used as the file name.
force	logic whether to proceed if the tar file exists.
quiet	logical whether to display no messages

Value

A ProcessedQuant class object with a updated quant_path slot.

COMBINE-lab/roe documentation built on Nov. 8, 2022, 5:23 p.m.