load_quant: load the fetched quantification result of a specific dataset...

In COMBINE-lab/roe: R utilities for alevin-fry

load the fetched quantification result of a specific dataset as a SingleCellExperiment object and store it in the sce slot of the returned processed_quant list as the sce slot. This function must be run after decompress_quant()

Description

load the fetched quantification result of a specific dataset as a SingleCellExperiment object and store it in the sce slot of the returned processed_quant list as the sce slot. This function must be run after decompress_quant()

Usage

load_quant(
  processed_quant,
  output_format = "scRNA",
  nonzero = FALSE,
  force = TRUE,
  quiet = FALSE
)

Arguments

processed_quant	a ProcessedQuant class object recording the details of a dataset.
output_format	the format of the returned SingleCellExperiment object. It will be passed to loadFry as the outputFormat parameter.
nonzero	It will be passed to loadFry as the nonzero parameter.
force	logic whether to proceed if the sce slot exists.
quiet	logical whether to display no messages. Default is set as FALSE.

Value

A ProcessedQuant class object with a updated sce slot.

COMBINE-lab/roe documentation built on Nov. 8, 2022, 5:23 p.m.