fullCopiesSummary: Get all of the counts data in a summarised data frame.
In CRUKMI-ComputationalBiology/twoddpcr: Classify 2-d Droplet Digital PCR (ddPCR) data and quantify the number of starting molecules
Description
Usage
Arguments
Value
Author(s)
Examples
Description
Returns a data frame with all the copies information, plus any optional
columns. This function is intended to be used as a final summary of the
molecule counts.
Usage
1
fullCopiesSummary(df, extraCols = NULL)
Arguments
df
A data frame generated by fullCountsSummary.
extraCols
A vector of column names from df to include. If
NULL, no extra columns are added. Defaults to NULL.
Value
A data frame with the basic figures, the mutant counts, the wild
type counts, the summarised counts, and extraCols if specified. Prints an
additional column for notes, indicating whether this run failed or if there
were fewer than 8000 accepted droplets.
Author(s)
Anthony Chiu, anthony.chiu@cruk.manchester.ac.uk
Examples
1
2
CRUKMI-ComputationalBiology/twoddpcr documentation built on Feb. 14, 2021, 9:18 p.m.
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Description Usage Arguments Value Author(s) Examples
Description
Returns a data frame with all the copies information, plus any optional columns. This function is intended to be used as a final summary of the molecule counts.
Usage
1 | fullCopiesSummary(df, extraCols = NULL)
|
Arguments
df |
A data frame generated by |
extraCols |
A vector of column names from |
Value
A data frame with the basic figures, the mutant counts, the wild type counts, the summarised counts, and extraCols if specified. Prints an additional column for notes, indicating whether this run failed or if there were fewer than 8000 accepted droplets.
Author(s)
Anthony Chiu, anthony.chiu@cruk.manchester.ac.uk
Examples
1 2 |
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