castSummary: Makes a long form data frame into wide form.

In CRUKMI-ComputationalBiology/twoddpcr: Classify 2-d Droplet Digital PCR (ddPCR) data and quantify the number of starting molecules

Description

Returns a data frame with the dependent columns prefixed with given labels (depending on the targets). All relevant columns are retained.

Usage

castSummary(df, ch1Label = "Mt", ch2Label = "Wt", rows = NULL)

Arguments

df	A data frame created by calling read.csv on the raw ddPCR output.
ch1Label	The prefix to use for the channel 1 target. Defaults to "Mt".
ch2Label	The prefix to use for the channel 2 target. Defaults to "Wt".
rows	The number of rows to retain from the original data frame. If NULL, all of the wells are used. Defaults to NULL.

Value

A data frame with the target rows merged.

Author(s)

Anthony Chiu, [e-mail]

Examples

## Cast output from Bio-Rad's QuantaSoft into wide form.
castSummary(KRAScountsQS)

## Only retain selected rows.
castSummary(KRAScountsQS, rows=c(1,4:6))

CRUKMI-ComputationalBiology/twoddpcr documentation built on Feb. 14, 2021, 9:18 p.m.