ddpcrPlate-class: An S4 class for multiple wells in a ddPCR experiment.

In CRUKMI-ComputationalBiology/twoddpcr: Classify 2-d Droplet Digital PCR (ddPCR) data and quantify the number of starting molecules

Description

An S4 class for multiple wells in a ddPCR experiment.

The constructor for the ddpcrPlate class.

Usage

ddpcrPlate(wells)

## S4 method for signature 'list'
ddpcrPlate(wells)

## S4 method for signature 'ddpcrPlate'
ddpcrPlate(wells)

## S4 method for signature 'character'
ddpcrPlate(wells)

## S4 method for signature 'missing'
ddpcrPlate(wells)

## S4 method for signature 'ddpcrPlate'
show(object)

Arguments

wells	Either: a list of ddpcrWell objects, a list of data frames of droplet amplitudes, or a character vector corresponding to a file path(s) containing CSV files of raw droplet amplitude data.
object	Any R object

Value

A ddpcrPlate object with the given wells.

Author(s)

Anthony Chiu, [e-mail]

Anthony Chiu, [e-mail]

Examples

## A \code{ddpcrPlate} object can be created from data from a list of data
## frames.
ddpcrPlate(KRASdata)

## A directory (or individual files) of droplet amplitude CSVs can also be
## loaded.
moreAmpsDir <- system.file("extdata", "more-amplitudes", package="twoddpcr")
ddpcrPlate(moreAmpsDir)

CRUKMI-ComputationalBiology/twoddpcr documentation built on Feb. 14, 2021, 9:18 p.m.