Files in CUGBF/deidentifiedDB
Utility to Manage Clemson University COVID-19 Surveillance Data

.Rbuildignore

.github/.gitignore

.github/workflows/R-CMD-check.yaml

.gitignore

DESCRIPTION

LICENSE

NAMESPACE

R/assign_mode.R R/build_us_zip.R R/compile_biorepo.R R/compile_diagnostics_data.R R/compile_genbank.R R/compile_genbank_table.R R/compile_sc_data.R R/compile_viralrecon.R R/compute_ct.R R/create_fasta_genbank.R R/detect_control.R R/do_prelim_tidy_sc.R R/get_ct.R R/get_daily_diagnostics.R R/get_global_entities.R R/get_metadata_genbank.R R/get_mode.R R/get_nextclade_distribution.R R/get_pangolin_distribution.R R/get_positivity.R R/get_redundant_samples.R R/get_sc_wo_redundant.R R/get_us_entities.R R/inspect_patient.R R/lookup_zip_code.R R/polish_diagnostics.R R/polish_sc.R R/prepare_demographics_sc.R R/pull_demographics.R R/pull_sc.R R/read_demographics_csv.R R/read_diagnostics_csv.R R/tidy_up_birth_year.R R/tidy_up_ct.R R/tidy_up_location.R R/tidy_up_race.R R/tidy_up_zip.R R/week_dates_info.R README.Rmd README.md

codecov.yml

deidentifiedDB.Rproj

inst/extdata/compile_genbank_table/sample_accession_report.tsv

inst/extdata/daily_diagnostics/sample_diagnostics_tbl.csv

inst/extdata/data_biorepo.csv

inst/extdata/data_demographics_sc.csv

inst/extdata/data_demographics_sc_v2.csv

inst/extdata/data_diagnostics.csv

inst/extdata/data_regions.csv

inst/extdata/data_viralrecon.csv

inst/extdata/data_zip_codes.csv

inst/extdata/fasta_dir/0E049B7CC0.consensus.fa

inst/extdata/fasta_dir/0E04B5690X.consensus.fa

inst/extdata/fasta_dir/0E04B796UT.consensus.fa

inst/extdata/fasta_dir/4CFD73EMN.consensus.fa

inst/extdata/fasta_dir/4CFD960CC.consensus.fa

inst/extdata/fasta_dir/7F26B7402M.consensus.fa

inst/extdata/genbank/dm.rds

inst/extdata/genbank/fasta_dir/117M18DD9F7E01A9YY.consensus.fa

inst/extdata/genbank/fasta_dir/117M18DDD3092954B0.consensus.fa

inst/extdata/genbank/fasta_dir/117M18E004DF076EAH.consensus.fa

inst/extdata/genbank/fasta_dir/117M18E5245869E5JK.consensus.fa

inst/extdata/genbank/fasta_dir/117M18F1AB4E63D750.consensus.fa

inst/extdata/genbank/fasta_dir/117M1913280D82EFYE.consensus.fa

inst/extdata/genbank/fasta_dir/117M191400DEB8BFST.consensus.fa

inst/extdata/genbank/sc.rds

inst/extdata/genbank/vr.rds

inst/extdata/positivity/dm.rds

inst/extdata/positivity/sc.rds

inst/extdata/redundant/dm.rds

inst/extdata/redundant/sc.rds

man/assign_mode.Rd man/build_us_zip.Rd man/compile_biorepo.Rd man/compile_diagnostics_data.Rd man/compile_genbank.Rd man/compile_genbank_table.Rd man/compile_sc_data.Rd man/compile_viralrecon.Rd man/compute_ct.Rd man/create_fasta_genbank.Rd man/detect_control.Rd man/do_prelim_tidy_sc.Rd

man/figures/README-pressure-1.png

CUGBF/deidentifiedDB documentation built on Sept. 13, 2023, 6:28 a.m.

rdrr.io home R language documentation Run R code online

CRAN packages Bioconductor packages R-Forge packages GitHub packages

Note that we can't provide technical support on individual packages. You should contact the package authors for that.

CUGBF/deidentifiedDB
Utility to Manage Clemson University COVID-19 Surveillance Data

Files in CUGBF/deidentifiedDB
Utility to Manage Clemson University COVID-19 Surveillance Data

R Package Documentation

Browse R Packages

We want your feedback!

CUGBF/deidentifiedDB Utility to Manage Clemson University COVID-19 Surveillance Data

Files in CUGBF/deidentifiedDB Utility to Manage Clemson University COVID-19 Surveillance Data

R Package Documentation

Browse R Packages

We want your feedback!

CUGBF/deidentifiedDB
Utility to Manage Clemson University COVID-19 Surveillance Data

Files in CUGBF/deidentifiedDB
Utility to Manage Clemson University COVID-19 Surveillance Data