Archived_versions/XSSS_call_v2.R

In CWetzel/XSSS: Extended Simple Stock Synthesis

source("F:/NOAA/SSSais/code/XSSS_AIS/XSSS_AIS_v2.R")
SSS.ais.fxn(filepath = "F:/NOAA/SSSais/", 
            file.name = "SpeciesX" , 
            control.name = "ENGL.ctl", 
            dat.name = "ENGL.dat",
            tantalus = FALSE, 
            read.seed = FALSE,
            entropy.level= 0.92,
            Niter = 2000,
            AIS.iter = 2000, 
            final.Niter = 5000,
            m.in = c(0.28,0.27,0.40,0.40), 
            h.in = c(0.87, 0.093, 0.20, 1, 1), 
            depl.in = c(0.60, 0.10, 0.01, 0.99, 1), 
            start.m.equal = FALSE, 
            years = seq(1876,2012,1), 
            ofl_yrs = seq(2013,2024,1),
            depl.yr = 2000
            )

source("F:/NOAA/SSSais/code/XSSS_AIS/XSSS_AIS_v2.R")
SSS.ais.fxn(filepath = "F:/NOAA/SSSais/",
            file.name = "Widow",
            control.name = "wdw1.ctl",
            dat.name = "wdw1.dat",
            tantalus = FALSE,
            read.seed = FALSE,
            entropy.level = 0.40,
            Niter = 100,
            AIS.iter = 100,
            final.Niter = 100,
            m.in = c(0.119768,0.129417,0.4,0.4),
            h.in = c(0.76, 0.152, 0.20, 1),
            depl.in = c(0.40,0.20, 0.01, 0.99,1),
            start.m.equal = FALSE,
            years = seq(1916,2010,1),
            ofl_yrs = seq(2011,2012,1),
            depl.yr = 2000
            )
            
SSS.ais.fxn(filepath = "F:/NOAA/SSSais/",
            file.name = "Canary",
            control.name = "CANARY.ctl",
            dat.name = "CANARY.dat",
            tantalus = FALSE,
            read.seed = FALSE,
            entropy.level = 0.92,
            Niter = 2000,
            AIS.iter = 2000,
            final.Niter = 5000,
            m.in = c(0.08,0.08,0.4,0.4),
            h.in = c(0.692, 0.2, 0.20, 1),
            depl.in = c(0.20,0.20, 0.01, 0.99,1),
            start.m.equal = FALSE,
            years = seq(1916,2008,1),
            ofl_yrs = seq(2009,2010,1),
            depl.yr = 2000)