Man pages for Calvagone/campsis
CAMPSIS package

applyCompartmentCharacteristicsApply compartment characteristics from model. In practice,...
applyScenarioApply scenario to the given model or dataset.
ArmCreate a treatment arm.
arm-classArm class.
arms-classArms class.
assignDoseNumberAssign dose number to each treatment entry.
BolusCreate one or several bolus(es).
bolus-classBolus class.
BootstrapDistributionCreate a bootstrap distribution. During function sampling,...
bootstrap_distribution-classBootstrap distribution class.
checkIIandADDLCheck ii and addl arguments in addition to time.
ConstantDistributionCreate a constant distribution. Its value will be constant...
constant_distribution-classConstant distribution class.
counterBalanceLocfModeCounter-balance LOCF mode for occasions & IOV. This function...
counterBalanceNocbModeCounter-balance NOCB mode for occasions & IOV. This function...
CovariateCreate a fixed covariate.
covariate-classCovariate class.
covariates-classCovariates class.
cutTableForEventCut table according to given iteration.
DatasetCreate a dataset.
dataset-classDataset class.
DatasetConfigCreate a dataset configuration. This configuration allows...
dataset_config-classDataset config class.
DatasetSummaryCreate a dataset summary (internal method).
DiscreteDistributionDiscrete distribution.
distribution-classDistribution class. See this class as an interface.
DoseAdaptationCreate a dose adaptation.
dose_adaptation-classDose adaptation class.
dose_adaptations-classDose adaptations class.
dosingOnlyFilter CAMPSIS output on dosing rows.
dropOthersReturn the 'DROP_OTHERS' string that may be used in the...
EtaDistributionCreate an ETA distribution. The resulting distribution is a...
EventCreate an interruption event.
event-classEvent class.
EventCovariateCreate an event covariate. These covariates can be modified...
event_covariate-classEvent covariate class.
EventIterationCreate an event iteration object.
EventRelatedObservationsCreate an event-related observations list. Please note that...
EventsCreate a list of interruption events.
events-classEvents class.
exportDelegateExport delegate method. This method is common to RxODE and...
exportTableDelegateExport table delegate.
factorScenariosFactor scenarios columns if not done yet.
fillIOVOccColumnsFill IOV/Occasion columns.
fixed_covariate-classFixed covariate class.
FixedDistributionCreate a fixed distribution. Each sample will be assigned a...
fixed_distribution-classFixed distribution class.
FunctionDistributionCreate a function distribution. During distribution sampling,...
function_distribution-classFunction distribution class.
generateIIVGenerate IIV.
getCovariatesGet all covariates (fixed / time-varying / event covariates).
getDatasetMaxTimeGet dataset max time.
getEventCovariatesGet all event-related covariates.
getEventIterationsGet list of event iterations.
getFixedCovariatesGet all fixed covariates.
getInitialConditionsGet initial conditions at simulation start-up.
getIOVsGet all IOV objects.
getOccasionsGet all occasions.
getRandomSeedValueGet random seed value.
getSeedGet seed value.
getSeedForDatasetExportGet seed for dataset export.
getSeedForIterationGet seed for iteration.
getSeedForParametersSamplingGet seed for parameter uncertainty sampling.
getSimulationEngineTypeGet simulation engine type.
getTimesGet all distinct times for the specified object.
getTimeVaryingCovariatesGet all time-varying covariates.
importCampsismodToNamespaceImport the whole campsismod package into NAMESPACE when...
InfusionCreate one or several infusion(s).
infusion-classInfusion class.
IOVDefine inter-occasion variability (IOV) into the dataset. A...
length-arm-methodReturn the number of subjects contained in this arm.
length-dataset-methodReturn the number of subjects contained in this dataset.
LogNormalDistributionCreate a log normal distribution.
mergeTimeVaryingCovariatesMerge time-varying covariates into a single data frame. This...
mrgsolve_engine-classmrgsolve engine class.
NormalDistributionCreate a normal distribution.
ObservationsCreate an observations list. Please note that the provided...
observations-classObservations class.
observations_set-classObservations set class.
obsOnlyFilter CAMPSIS output on observation rows.
OccasionDefine a new occasion. Occasions are defined by mapping...
occasion-classOccasion class.
occasions-classOccasions class.
ParameterDistributionCreate a parameter distribution. The resulting distribution...
PICompute the prediction interval summary over time.
preprocessArmColumnPreprocess ARM column. Add ARM equation in model...
preprocessDosingPreprocess 'dosing' argument.
preprocessEventsPre-process events.
preprocessFunctionPre-process function argument.
preprocessIdsPreprocess subjects ID's.
preprocessNocbPreprocess 'nocb' argument.
preprocessOutvarsPreprocess 'outvars' argument. Outvars is a character vector...
preprocessReplicatesPreprocess 'replicates' argument.
preprocessScenariosPre-process scenarios.
preprocessSlicesPreprocess 'slices' argument.
processArmLabelsProcess arm labels. Arm identifiers in ARM column are...
processDropOthersProcess 'DROP_OTHERS'.
processSimulateArgumentsPreprocess arguments of the simulate method.
protocol-classProtocol class.
removeInitialConditionsRemove initial conditions.
reorderColumnsReorder output columns.
retrieveParameterValueRetrieve the parameter value (standardised) for the specified...
rxode_engine-classRxODE engine class.
sampleSample generic object.
sampleCovariatesListSample covariates list.
sampleDistributionAsTibbleSample a distribution and return a tibble.
sampleTimeVaryingCovariatesSample time-varying covariates.
ScenarioCreate an scenario.
scenario-classScenario class.
ScenariosCreate a list of scenarios.
scenarios-classScenarios class.
setLabelSet the label.
setSeedSet the seed. The goal of this method is to centralise all...
setSubjectsSet the number of subjects.
shadedPlotShaded plot (or prediction interval plot).
simulateSimulate function.
simulateDelegateSimulation delegate (several replicates).
simulateDelegateCoreSimulation delegate core (single replicate).
simulateScenariosSimulation scenarios.
simulation_engine-classSimulation engine class.
spaghettiPlotSpaghetti plot.
TimeVaryingCovariateCreate a time-varying covariate. This covariate will be...
time_varying_covariate-classTime-varying covariate class.
toDatasetSummaryConvert dataset to dataset summary (internal method).
toExplicitDistributionConvert user-given distribution to an explicit pmxsim...
treatment-classTreatment class.
treatment_iov-classTreatment IOV class.
treatment_iovs-classTreatment IOV's class.
undefined_distribution-classUndefined distribution class. This type of object is...
UniformDistributionCreate an uniform distribution.
VPCCompute the VPC summary. Input data frame must contain the...
vpcPlotVPC plot (1 plot per scenario).
Calvagone/campsis documentation built on Jan. 14, 2022, 9:40 p.m.