Files in Calvagone/campsis
CAMPSIS package

.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.github/workflows/test-coverage.yaml
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/arm.R R/arms.R R/check.R R/covariate.R R/covariates.R R/dataset.R R/dataset_config.R R/dataset_summary.R R/default_plot.R R/distribution.R R/dose_adaptation.R R/dose_adaptations.R R/event.R R/event_logic.R R/events.R R/generic.R R/observations.R R/observations_set.R R/occasion.R R/occasions.R R/parameter_uncertainty.R R/protocol.R R/results_processing.R R/scenario.R R/scenarios.R R/seed.R R/simulate.R R/simulate_preprocess.R R/simulation_engine.R R/time_entry.R R/treatment.R R/treatment_entry.R R/treatment_iov.R R/treatment_iovs.R R/utilities.R README.Rmd README.md
README_files/figure-gfm/get_started_shaded_plot-1.png
README_files/figure-gfm/unnamed-chunk-6-1.png
_pkgdown.yml
campsis.Rproj
man/Arm.Rd man/Bolus.Rd man/BootstrapDistribution.Rd man/ConstantDistribution.Rd man/Covariate.Rd man/Dataset.Rd man/DatasetConfig.Rd man/DatasetSummary.Rd man/DiscreteDistribution.Rd man/DoseAdaptation.Rd man/EtaDistribution.Rd man/Event.Rd man/EventCovariate.Rd man/EventIteration.Rd man/EventRelatedObservations.Rd man/Events.Rd man/FixedDistribution.Rd man/FunctionDistribution.Rd man/IOV.Rd man/Infusion.Rd man/LogNormalDistribution.Rd man/NormalDistribution.Rd man/Observations.Rd man/Occasion.Rd man/PI.Rd man/ParameterDistribution.Rd man/Scenario.Rd man/Scenarios.Rd man/TimeVaryingCovariate.Rd man/UniformDistribution.Rd man/VPC.Rd man/applyCompartmentCharacteristics.Rd man/applyScenario.Rd man/arm-class.Rd man/arms-class.Rd man/assignDoseNumber.Rd man/bolus-class.Rd man/bootstrap_distribution-class.Rd man/checkIIandADDL.Rd man/constant_distribution-class.Rd man/counterBalanceLocfMode.Rd man/counterBalanceNocbMode.Rd man/covariate-class.Rd man/covariates-class.Rd man/cutTableForEvent.Rd man/dataset-class.Rd man/dataset_config-class.Rd man/distribution-class.Rd man/dose_adaptation-class.Rd man/dose_adaptations-class.Rd man/dosingOnly.Rd man/dropOthers.Rd man/event-class.Rd man/event_covariate-class.Rd man/events-class.Rd man/exportDelegate.Rd man/exportTableDelegate.Rd man/factorScenarios.Rd man/fillIOVOccColumns.Rd man/fixed_covariate-class.Rd man/fixed_distribution-class.Rd man/function_distribution-class.Rd man/generateIIV.Rd man/getCovariates.Rd man/getDatasetMaxTime.Rd man/getEventCovariates.Rd man/getEventIterations.Rd man/getFixedCovariates.Rd man/getIOVs.Rd man/getInitialConditions.Rd man/getOccasions.Rd man/getRandomSeedValue.Rd man/getSeed.Rd man/getSeedForDatasetExport.Rd man/getSeedForIteration.Rd man/getSeedForParametersSampling.Rd man/getSimulationEngineType.Rd man/getTimeVaryingCovariates.Rd man/getTimes.Rd man/importCampsismodToNamespace.Rd man/infusion-class.Rd man/length-arm-method.Rd man/length-dataset-method.Rd man/mergeTimeVaryingCovariates.Rd man/mrgsolve_engine-class.Rd man/obsOnly.Rd man/observations-class.Rd man/observations_set-class.Rd man/occasion-class.Rd man/occasions-class.Rd man/preprocessArmColumn.Rd man/preprocessDosing.Rd man/preprocessEvents.Rd man/preprocessFunction.Rd man/preprocessIds.Rd man/preprocessNocb.Rd man/preprocessOutvars.Rd man/preprocessReplicates.Rd man/preprocessScenarios.Rd man/preprocessSlices.Rd man/processArmLabels.Rd man/processDropOthers.Rd man/processSimulateArguments.Rd man/protocol-class.Rd man/removeInitialConditions.Rd man/reorderColumns.Rd man/retrieveParameterValue.Rd man/rxode_engine-class.Rd man/sample.Rd man/sampleCovariatesList.Rd man/sampleDistributionAsTibble.Rd man/sampleTimeVaryingCovariates.Rd man/scenario-class.Rd man/scenarios-class.Rd man/setLabel.Rd man/setSeed.Rd man/setSubjects.Rd man/shadedPlot.Rd man/simulate.Rd man/simulateDelegate.Rd man/simulateDelegateCore.Rd man/simulateScenarios.Rd man/simulation_engine-class.Rd man/spaghettiPlot.Rd man/time_varying_covariate-class.Rd man/toDatasetSummary.Rd man/toExplicitDistribution.Rd man/treatment-class.Rd man/treatment_iov-class.Rd man/treatment_iovs-class.Rd man/undefined_distribution-class.Rd man/vpcPlot.Rd tests/testthat.R
tests/testthat/models/minimalist_model/model.campsis
tests/testthat/models/simple_tte_model/model.campsis
tests/testthat/models/simple_tte_model/omega.csv
tests/testthat/models/simple_tte_model/sigma.csv
tests/testthat/models/simple_tte_model/theta.csv
tests/testthat/non_regression/3_bolus_iov_on_f1_cp.csv
tests/testthat/non_regression/3_boluses_iiv_alag1.csv
tests/testthat/non_regression/3_boluses_iiv_f1.csv
tests/testthat/non_regression/3_boluses_iiv_iov_alag1.csv
tests/testthat/non_regression/3_boluses_iiv_iov_alag1_cp.csv
tests/testthat/non_regression/3_boluses_iiv_iov_f1.csv
tests/testthat/non_regression/3_boluses_iiv_iov_f1_cp.csv
tests/testthat/non_regression/3_boluses_iov_cl_cp.csv
tests/testthat/non_regression/3_boluses_iov_ka_1.csv
tests/testthat/non_regression/3_boluses_iov_ka_1_cp.csv
tests/testthat/non_regression/3_boluses_iov_ka_2.csv
tests/testthat/non_regression/3_boluses_iov_ka_2_cp.csv
tests/testthat/non_regression/3_infusions_iiv_d1.csv
tests/testthat/non_regression/3_infusions_iiv_iov_d1.csv
tests/testthat/non_regression/3_infusions_iiv_iov_d1_cp.csv
tests/testthat/non_regression/bolus_2arms.csv
tests/testthat/non_regression/bolus_2arms_bioavailability.csv
tests/testthat/non_regression/bolus_2arms_cp.csv
tests/testthat/non_regression/bolus_2arms_cp_arm.csv
tests/testthat/non_regression/bolus_fixed_lag_time_cp.csv
tests/testthat/non_regression/bolus_fixed_lag_time_dataset.csv
tests/testthat/non_regression/bolus_fixed_lag_time_model.csv
tests/testthat/non_regression/bolus_infusion_same_cmt.csv
tests/testthat/non_regression/bolus_infusion_same_cmt_cp.csv
tests/testthat/non_regression/clear_central_event_cp.csv
tests/testthat/non_regression/dose_adaptation_by_bw.csv
tests/testthat/non_regression/dose_adaptation_by_bw_a_test.csv
tests/testthat/non_regression/dose_adaptation_by_bw_cp.csv
tests/testthat/non_regression/dose_adaptation_by_bw_infusion.csv
tests/testthat/non_regression/dose_adaptation_by_bw_infusion_cp.csv
tests/testthat/non_regression/dose_adaptation_ctrough_cp_dose.csv
tests/testthat/non_regression/event_daily_dose_cp.csv
tests/testthat/non_regression/event_in_multiple_arms_cp.csv
tests/testthat/non_regression/event_interruption_at_dose_cp.csv
tests/testthat/non_regression/event_interruption_at_dose_iov_cp.csv
tests/testthat/non_regression/event_varying_bw_2arms_ind_cp.csv
tests/testthat/non_regression/event_varying_bw_cp.csv
tests/testthat/non_regression/full_uncertainty_cp.csv
tests/testthat/non_regression/full_uncertainty_y.csv
tests/testthat/non_regression/infusion_duration.csv
tests/testthat/non_regression/infusion_duration_cp.csv
tests/testthat/non_regression/infusion_rate_lag_time1_dataset.csv
tests/testthat/non_regression/infusion_rate_lag_time1_dataset_cp.csv
tests/testthat/non_regression/infusion_rate_lag_time2_dataset.csv
tests/testthat/non_regression/infusion_rate_lag_time2_dataset_cp.csv
tests/testthat/non_regression/initial_conditions_cp.csv
tests/testthat/non_regression/minimalist_model_a_central.csv
tests/testthat/non_regression/objects_defined_in_different_order.csv
tests/testthat/non_regression/occ_as_time_varying_cov.csv
tests/testthat/non_regression/occ_as_time_varying_cov_cp.csv
tests/testthat/non_regression/scenarios_few_changes_on_dataset_scenario_cp.csv
tests/testthat/non_regression/scenarios_few_changes_on_model_scenario_cp.csv
tests/testthat/non_regression/simple_bolus.csv
tests/testthat/non_regression/simple_bolus_bioavailability.csv
tests/testthat/non_regression/simple_bolus_bioavailability_cp.csv
tests/testthat/non_regression/simple_bolus_cp.csv
tests/testthat/non_regression/simple_tte_model_a_survival_trigger.csv
tests/testthat/non_regression/wt_as_time_varying_cov.csv
tests/testthat/non_regression/wt_as_time_varying_cov_locf_cp.csv
tests/testthat/non_regression/wt_as_time_varying_cov_nocb_cp.csv
tests/testthat/testArm.R tests/testthat/testArms.R tests/testthat/testCovariate.R tests/testthat/testCovariates.R tests/testthat/testDataset.R tests/testthat/testDistribution.R tests/testthat/testDoseAdaptation.R tests/testthat/testEvent.R tests/testthat/testEvents.R tests/testthat/testObservations.R tests/testthat/testOccasion.R tests/testthat/testOccasions.R tests/testthat/testParameterUncertainty.R tests/testthat/testRUV.R tests/testthat/testScenario.R tests/testthat/testScenarios.R tests/testthat/testSeed.R tests/testthat/testShowMethod.R tests/testthat/testSimulateArguments.R tests/testthat/testSimulateBioavailability.R tests/testthat/testSimulateBolus.R tests/testthat/testSimulateBolusInfusionSameCmt.R tests/testthat/testSimulateCmtCharacteristics.R tests/testthat/testSimulateDeclare.R tests/testthat/testSimulateDoseAdaptation.R tests/testthat/testSimulateDosingInfo.R tests/testthat/testSimulateEvents.R tests/testthat/testSimulateEventsLogic.R tests/testthat/testSimulateIOV.R tests/testthat/testSimulateInfusion.R tests/testthat/testSimulateInit.R tests/testthat/testSimulateLagTime.R tests/testthat/testSimulateMinimalistModel.R tests/testthat/testSimulateNoOmega.R tests/testthat/testSimulateNocbLocf.R tests/testthat/testSimulateOutvars.R tests/testthat/testSimulateReplicates.R tests/testthat/testSimulateScenarios.R tests/testthat/testSimulateTTEModels.R tests/testthat/testSimulateTable.R tests/testthat/testSimulateTimeVaryingCovariates.R tests/testthat/testSimulateWeirdCases.R tests/testthat/testTreatment.R tests/testthat/testTreatmentEntry.R tests/testthat/testUtils.R vignettes/campsis.Rmd
vignettes/resources/readme_plot.png
vignettes/v01_dataset.Rmd vignettes/v02_uncertainties.Rmd vignettes/v03_covariates.Rmd vignettes/v04_bioavailability.Rmd vignettes/v05_lag_time.Rmd vignettes/v06_infusions.Rmd vignettes/v07_iov.Rmd vignettes/v08_initial_conditions.Rmd vignettes/v09_dose_adaptation.Rmd vignettes/v10_replicate_study.Rmd vignettes/v11_scenarios.Rmd vignettes/v12_time_varying_covariates.Rmd vignettes/v13_events.Rmd vignettes/v14_complex_pkpd_models.Rmd vignettes/v15_pkpd_model_library.Rmd
Calvagone/campsis documentation built on Jan. 14, 2022, 9:40 p.m.