focusPlot: Plot a spectrum focusing on a specific mass-range
In CeMOS-Mannheim/moleculaR: Spatial Probabilistic Mapping of Metabolite Ensembles in Mass Spectrometry Imaging
View source: R/plotting-functions.R
focusPlot R Documentation
Plot a spectrum focusing on a specific mass-range
Description
This function plots a spectrum ('MassPeaks' or 'MassSpectrum') and provides
a focus on a mass range around a given m/z of interest taking into
consideration the fwhm at that mass.
Usage
focusPlot(x, m, fwhm, sigmalim = 6, col = NULL)
Arguments
x
an object of type 'MassPeaks' or 'MassSpectrum'. Either a single
spectrum or a mean spectrum (see '?MALDIquant::mergeMassPeaks').
m
a numeric (vector), the m/z value(S) at which to do the plotting.
fwhm
a numeric (vector), the fwhm value(s) at 'm', normally generated by 'getFwhm'.
Must have the same length as 'm'.
sigmalim
an integer, how many sigmas (of the calculated Gaussian)
around 'm' should be considered in the plot. Note that the superimposed
Gaussian always spans 'm ± sigma'.
col
a character (vector), colors used for the m/z values in 'm'.
Value
a plot.
CeMOS-Mannheim/moleculaR documentation built on April 14, 2025, 8:27 a.m.
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View source: R/plotting-functions.R
| focusPlot | R Documentation |
Plot a spectrum focusing on a specific mass-range
Description
This function plots a spectrum ('MassPeaks' or 'MassSpectrum') and provides a focus on a mass range around a given m/z of interest taking into consideration the fwhm at that mass.
Usage
focusPlot(x, m, fwhm, sigmalim = 6, col = NULL)
Arguments
x |
an object of type 'MassPeaks' or 'MassSpectrum'. Either a single spectrum or a mean spectrum (see '?MALDIquant::mergeMassPeaks'). |
m |
a numeric (vector), the m/z value(S) at which to do the plotting. |
fwhm |
a numeric (vector), the fwhm value(s) at 'm', normally generated by 'getFwhm'. Must have the same length as 'm'. |
sigmalim |
an integer, how many sigmas (of the calculated Gaussian) around 'm' should be considered in the plot. Note that the superimposed Gaussian always spans 'm ± sigma'. |
col |
a character (vector), colors used for the m/z values in 'm'. |
Value
a plot.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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