Files in CellFateNucOrg/nanodsmf
Analyse nanopore dual enzyme single molecule footprinting data (nanoDSMF)
DESCRIPTION
NAMESPACE
R/dSMF.R
R/data.R
R/grangesUtils.R
R/magittrImport.R
R/nanoSingleMolecule.R
README.md
data/Control_CpG.RData
data/Control_GpC.RData
data/Control_freqCmG.RData
data/Control_freqGCm.RData
data/MCviPI_CpG.RData
data/MCviPI_GpC.RData
data/MCviPI_freqCmG.RData
data/MCviPI_freqGCm.RData
data/MSssI_CpG.RData
data/MSssI_GpC.RData
data/MSssI_freqCmG.RData
data/MSssI_freqGCm.RData
data/ttTi5605dna.RData
data/ttTi5605gr.RData
man/BSgenomeToDNAStringSet.Rd
man/BSgenomeToGR.Rd
man/DNAStringSetToGR.Rd
man/MCviPI_CpG.Rd
man/MCviPI_GpC.Rd
man/MCviPI_freqCmG.Rd
man/MCviPI_freqGCm.Rd
man/MSssI_CpG.Rd
man/MSssI_GpC.Rd
man/MSssI_freqCmG.Rd
man/MSssI_freqGCm.Rd
man/applyGRonGR.Rd
man/findGenomeMotifs.Rd
man/findNonOverlappingMotifs.Rd
man/getIsolatedSites.Rd
man/getOverlappingSites.Rd
man/mIdxToGR.Rd
man/mergeCGandGCmat.Rd
man/mergeCGandGCtsv.Rd
man/plotSingleMoleculesAmp.Rd
man/splitGCGCruns.Rd
man/splitMotifs.Rd
man/splitRangeInPairs.Rd
man/tsvToGR.Rd
man/tsvToMethMat.Rd
man/ttTi5605dna.Rd
man/ttTi5605gr.Rd
man/ucscToWbGR.Rd
man/wbToUcscGR.Rd
prep/prepareData.R
tests/testthat.R
tests/testthat/test-grangesUtils.R
tests/testthat/test-nanodsmf.R
vignettes/.gitignore
vignettes/ttti5605methSingleMolecule.Rmd
