tsvToGR: Convert nanopore tsv to genomic ranges

In CellFateNucOrg/nanodsmf: Analyse nanopore dual enzyme single molecule footprinting data (nanoDSMF)

Description

Convert nanopore tsv to genomic ranges

Usage

tsvToGR(tsv, keepCols = c("read_name", "log_lik_ratio"))

Arguments

tsv	A tab serparated values text file where individual motifs have been split
keepCols	Columns from the tsv to put in as metadata in the new GR object

Value

A genomic ranges object of motifs in tsv with some of the tsv data columns as metadata

Examples

tsvToGR(splitMotifs(MSssI_CpG,"CG"))

CellFateNucOrg/nanodsmf documentation built on July 23, 2020, 4:57 p.m.