API for CenterForStatistics-UGent/SPsimSeq
Semi-parametric simulation tool for bulk and single-cell RNA sequencing data
| Global functions | |
|---|---|
| SPsimPerGene | Man page Source code |
| SPsimSeq | Man page Source code |
| SPsimSeq-package | Man page |
| buildXmat | Man page Source code |
| calculateCPM | Man page Source code |
| checkInputValidity | Man page Source code |
| chooseCandGenes | Man page Source code |
| configExperiment | Man page Source code |
| constructDens | Man page Source code |
| estLibSizeDistr | Man page Source code |
| evaluateDensities | Man page Source code |
| expit | Man page Source code |
| extractMat | Man page |
| extractMat,SingleCellExperiment-method | Man page |
| extractMat,data.frame-method | Man page |
| extractMat,matrix-method | Man page |
| extractMat,phyloseq-method | Man page |
| fitLLmodel | Man page Source code |
| fitPoisGlm | Man page Source code |
| fracZeroLogitModel | Man page Source code |
| genCopula | Man page Source code |
| genLibSizes | Man page Source code |
| geneParmEst | Man page Source code |
| matchCopula | Man page Source code |
| obtCorMatsBatch | Man page Source code |
| obtCount | Man page Source code |
| parmEstDensVec | Man page Source code |
| prepareSPsimOutputs | Man page Source code |
| samZeroID | Man page Source code |
| scNGP.data | Man page |
| selectGenes | Man page Source code |
| zeroProbModel | Man page Source code |
| zhang.data.sub | Man page |
